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Entry type
Status
Per-residue features
Colour by
Protein
GBC53788.1
Length
136 amino acids
Protein family membership
- Small nuclear ribonucleoprotein Sm D3 (IPR034099)
Domains and repeats
-
Domain6 - 127
- LSM domain (IPR010920)
- LSM domain, eukaryotic/archaea-type (IPR001163)
- LSM domain (IPR010920)
1
20
40
60
80
100
120
136
Detailed signature matches
Residue annotation
-
Sm1 motif cd0172118VSm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3)19TSm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3)20LSm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3)21ESm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3)22LSm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3)23NSm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3)24NSm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3)26TSm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3)27VSm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3)28YSm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3)29RSm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3)30GSm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3)31KSm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3)32LSm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3)33SSm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3)34ESm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3)35ASm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3)36ESm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3)37DSm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3)38NSm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3)40NSm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3)41VSm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3)42QSm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3)43LSm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3)44RSm1 motif
18V, 19T, 20L, 21E, 22L, 23N, 24N, 26T, 27V, 28Y, 29R, 30G, 31K, 32L, 33S, 34E, 35A, 36E, 37D, 38N, 40N, 41V, 42Q, 43L, 44R
CDD
cd01721 (Sm_D3) -
putative hexamer i...21Eputative hexamer interface
21E, 22L, 23N, 24N, 26T, 28Y, 34E, 35A, 40N, 42Q, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F
CDD
cd01721 (Sm_D3)22Lputative hexamer interface
21E, 22L, 23N, 24N, 26T, 28Y, 34E, 35A, 40N, 42Q, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F
CDD
cd01721 (Sm_D3)23Nputative hexamer interface
21E, 22L, 23N, 24N, 26T, 28Y, 34E, 35A, 40N, 42Q, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F
CDD
cd01721 (Sm_D3)24Nputative hexamer interface
21E, 22L, 23N, 24N, 26T, 28Y, 34E, 35A, 40N, 42Q, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F
CDD
cd01721 (Sm_D3)26Tputative hexamer interface
21E, 22L, 23N, 24N, 26T, 28Y, 34E, 35A, 40N, 42Q, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F
CDD
cd01721 (Sm_D3)28Yputative hexamer interface
21E, 22L, 23N, 24N, 26T, 28Y, 34E, 35A, 40N, 42Q, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F
CDD
cd01721 (Sm_D3)34Eputative hexamer interface
21E, 22L, 23N, 24N, 26T, 28Y, 34E, 35A, 40N, 42Q, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F
CDD
cd01721 (Sm_D3)35Aputative hexamer interface
21E, 22L, 23N, 24N, 26T, 28Y, 34E, 35A, 40N, 42Q, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F
CDD
cd01721 (Sm_D3)40Nputative hexamer interface
21E, 22L, 23N, 24N, 26T, 28Y, 34E, 35A, 40N, 42Q, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F
CDD
cd01721 (Sm_D3)42Qputative hexamer interface
21E, 22L, 23N, 24N, 26T, 28Y, 34E, 35A, 40N, 42Q, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F
CDD
cd01721 (Sm_D3)60Qputative hexamer interface
21E, 22L, 23N, 24N, 26T, 28Y, 34E, 35A, 40N, 42Q, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F
CDD
cd01721 (Sm_D3)61Vputative hexamer interface
21E, 22L, 23N, 24N, 26T, 28Y, 34E, 35A, 40N, 42Q, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F
CDD
cd01721 (Sm_D3)62Yputative hexamer interface
21E, 22L, 23N, 24N, 26T, 28Y, 34E, 35A, 40N, 42Q, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F
CDD
cd01721 (Sm_D3)63Iputative hexamer interface
21E, 22L, 23N, 24N, 26T, 28Y, 34E, 35A, 40N, 42Q, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F
CDD
cd01721 (Sm_D3)64Rputative hexamer interface
21E, 22L, 23N, 24N, 26T, 28Y, 34E, 35A, 40N, 42Q, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F
CDD
cd01721 (Sm_D3)65Gputative hexamer interface
21E, 22L, 23N, 24N, 26T, 28Y, 34E, 35A, 40N, 42Q, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F
CDD
cd01721 (Sm_D3)66Sputative hexamer interface
21E, 22L, 23N, 24N, 26T, 28Y, 34E, 35A, 40N, 42Q, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F
CDD
cd01721 (Sm_D3)67Hputative hexamer interface
21E, 22L, 23N, 24N, 26T, 28Y, 34E, 35A, 40N, 42Q, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F
CDD
cd01721 (Sm_D3)68Vputative hexamer interface
21E, 22L, 23N, 24N, 26T, 28Y, 34E, 35A, 40N, 42Q, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F
CDD
cd01721 (Sm_D3)69Rputative hexamer interface
21E, 22L, 23N, 24N, 26T, 28Y, 34E, 35A, 40N, 42Q, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F
CDD
cd01721 (Sm_D3)70Fputative hexamer interface
21E, 22L, 23N, 24N, 26T, 28Y, 34E, 35A, 40N, 42Q, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F
CDD
cd01721 (Sm_D3) -
heptamer interface...26Theptamer interface
26T, 28Y, 36E, 39M, 42Q, 50A, 58L, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F, 71F, 72I, 73V
CDD
cd01721 (Sm_D3)28Yheptamer interface
26T, 28Y, 36E, 39M, 42Q, 50A, 58L, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F, 71F, 72I, 73V
CDD
cd01721 (Sm_D3)36Eheptamer interface
26T, 28Y, 36E, 39M, 42Q, 50A, 58L, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F, 71F, 72I, 73V
CDD
cd01721 (Sm_D3)39Mheptamer interface
26T, 28Y, 36E, 39M, 42Q, 50A, 58L, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F, 71F, 72I, 73V
CDD
cd01721 (Sm_D3)42Qheptamer interface
26T, 28Y, 36E, 39M, 42Q, 50A, 58L, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F, 71F, 72I, 73V
CDD
cd01721 (Sm_D3)50Aheptamer interface
26T, 28Y, 36E, 39M, 42Q, 50A, 58L, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F, 71F, 72I, 73V
CDD
cd01721 (Sm_D3)58Lheptamer interface
26T, 28Y, 36E, 39M, 42Q, 50A, 58L, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F, 71F, 72I, 73V
CDD
cd01721 (Sm_D3)60Qheptamer interface
26T, 28Y, 36E, 39M, 42Q, 50A, 58L, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F, 71F, 72I, 73V
CDD
cd01721 (Sm_D3)61Vheptamer interface
26T, 28Y, 36E, 39M, 42Q, 50A, 58L, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F, 71F, 72I, 73V
CDD
cd01721 (Sm_D3)62Yheptamer interface
26T, 28Y, 36E, 39M, 42Q, 50A, 58L, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F, 71F, 72I, 73V
CDD
cd01721 (Sm_D3)63Iheptamer interface
26T, 28Y, 36E, 39M, 42Q, 50A, 58L, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F, 71F, 72I, 73V
CDD
cd01721 (Sm_D3)64Rheptamer interface
26T, 28Y, 36E, 39M, 42Q, 50A, 58L, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F, 71F, 72I, 73V
CDD
cd01721 (Sm_D3)65Gheptamer interface
26T, 28Y, 36E, 39M, 42Q, 50A, 58L, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F, 71F, 72I, 73V
CDD
cd01721 (Sm_D3)66Sheptamer interface
26T, 28Y, 36E, 39M, 42Q, 50A, 58L, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F, 71F, 72I, 73V
CDD
cd01721 (Sm_D3)67Hheptamer interface
26T, 28Y, 36E, 39M, 42Q, 50A, 58L, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F, 71F, 72I, 73V
CDD
cd01721 (Sm_D3)68Vheptamer interface
26T, 28Y, 36E, 39M, 42Q, 50A, 58L, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F, 71F, 72I, 73V
CDD
cd01721 (Sm_D3)69Rheptamer interface
26T, 28Y, 36E, 39M, 42Q, 50A, 58L, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F, 71F, 72I, 73V
CDD
cd01721 (Sm_D3)70Fheptamer interface
26T, 28Y, 36E, 39M, 42Q, 50A, 58L, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F, 71F, 72I, 73V
CDD
cd01721 (Sm_D3)71Fheptamer interface
26T, 28Y, 36E, 39M, 42Q, 50A, 58L, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F, 71F, 72I, 73V
CDD
cd01721 (Sm_D3)72Iheptamer interface
26T, 28Y, 36E, 39M, 42Q, 50A, 58L, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F, 71F, 72I, 73V
CDD
cd01721 (Sm_D3)73Vheptamer interface
26T, 28Y, 36E, 39M, 42Q, 50A, 58L, 60Q, 61V, 62Y, 63I, 64R, 65G, 66S, 67H, 68V, 69R, 70F, 71F, 72I, 73V
CDD
cd01721 (Sm_D3) -
RNA binding site c...38N40N51R64R65G66S
-
Sm2 motif cd0172160Q61V62Y63I64R65G66S67H68V69R70F71F
GO term prediction
Biological Process
GO:0000387 spliceosomal snRNP assembly
Molecular Function
None predicted.
Cellular Component
GO:0005681 spliceosomal complex