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Entry type
Status
Per-residue features
Colour by
Protein
GBC53344.1
Length
224 amino acids
Protein family membership
None predicted.
Domains and repeats
-
Domain21 - 131
- Ribosomal protein S5 domain 2-type fold (IPR020568)
- Exoribonuclease, phosphorolytic domain 1 (IPR001247)
- Ribosomal protein S5 domain 2-type fold (IPR020568)
-
Domain131 - 218
- Exoribonuclease, phosphorolytic domain 2 (IPR015847)
1
50
100
150
224
Detailed signature matches
no IPR
Residue annotation
-
Rrp40 interface cd...21CRrp40 interface
21C, 23L, 24S, 26D, 45P, 46A, 47E, 95H, 97R, 129G, 131P, 132M, 133K, 135I, 171K, 209R
CDD
cd11372 (RNase_PH_RRP46)23LRrp40 interface
21C, 23L, 24S, 26D, 45P, 46A, 47E, 95H, 97R, 129G, 131P, 132M, 133K, 135I, 171K, 209R
CDD
cd11372 (RNase_PH_RRP46)24SRrp40 interface
21C, 23L, 24S, 26D, 45P, 46A, 47E, 95H, 97R, 129G, 131P, 132M, 133K, 135I, 171K, 209R
CDD
cd11372 (RNase_PH_RRP46)26DRrp40 interface
21C, 23L, 24S, 26D, 45P, 46A, 47E, 95H, 97R, 129G, 131P, 132M, 133K, 135I, 171K, 209R
CDD
cd11372 (RNase_PH_RRP46)45PRrp40 interface
21C, 23L, 24S, 26D, 45P, 46A, 47E, 95H, 97R, 129G, 131P, 132M, 133K, 135I, 171K, 209R
CDD
cd11372 (RNase_PH_RRP46)46ARrp40 interface
21C, 23L, 24S, 26D, 45P, 46A, 47E, 95H, 97R, 129G, 131P, 132M, 133K, 135I, 171K, 209R
CDD
cd11372 (RNase_PH_RRP46)47ERrp40 interface
21C, 23L, 24S, 26D, 45P, 46A, 47E, 95H, 97R, 129G, 131P, 132M, 133K, 135I, 171K, 209R
CDD
cd11372 (RNase_PH_RRP46)95HRrp40 interface
21C, 23L, 24S, 26D, 45P, 46A, 47E, 95H, 97R, 129G, 131P, 132M, 133K, 135I, 171K, 209R
CDD
cd11372 (RNase_PH_RRP46)97RRrp40 interface
21C, 23L, 24S, 26D, 45P, 46A, 47E, 95H, 97R, 129G, 131P, 132M, 133K, 135I, 171K, 209R
CDD
cd11372 (RNase_PH_RRP46)129GRrp40 interface
21C, 23L, 24S, 26D, 45P, 46A, 47E, 95H, 97R, 129G, 131P, 132M, 133K, 135I, 171K, 209R
CDD
cd11372 (RNase_PH_RRP46)131PRrp40 interface
21C, 23L, 24S, 26D, 45P, 46A, 47E, 95H, 97R, 129G, 131P, 132M, 133K, 135I, 171K, 209R
CDD
cd11372 (RNase_PH_RRP46)132MRrp40 interface
21C, 23L, 24S, 26D, 45P, 46A, 47E, 95H, 97R, 129G, 131P, 132M, 133K, 135I, 171K, 209R
CDD
cd11372 (RNase_PH_RRP46)133KRrp40 interface
21C, 23L, 24S, 26D, 45P, 46A, 47E, 95H, 97R, 129G, 131P, 132M, 133K, 135I, 171K, 209R
CDD
cd11372 (RNase_PH_RRP46)135IRrp40 interface
21C, 23L, 24S, 26D, 45P, 46A, 47E, 95H, 97R, 129G, 131P, 132M, 133K, 135I, 171K, 209R
CDD
cd11372 (RNase_PH_RRP46)171KRrp40 interface
21C, 23L, 24S, 26D, 45P, 46A, 47E, 95H, 97R, 129G, 131P, 132M, 133K, 135I, 171K, 209R
CDD
cd11372 (RNase_PH_RRP46)209RRrp40 interface
21C, 23L, 24S, 26D, 45P, 46A, 47E, 95H, 97R, 129G, 131P, 132M, 133K, 135I, 171K, 209R
CDD
cd11372 (RNase_PH_RRP46) -
hexamer interface ...25Rhexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)26Dhexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)41Thexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)43Nhexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)44Ghexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)45Phexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)61Dhexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)63Vhexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)68Vhexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)77Thexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)80Yhexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)84Shexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)98Thexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)103Vhexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)108Vhexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)126Ihexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)127Dhexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)128Ahexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)176Lhexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)177Lhexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)178Fhexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)179Chexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)180Ehexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)181Shexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)182Lhexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)183Ghexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)184Lhexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)185Fhexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)186Thexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)187Dhexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)190Yhexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)194Yhexamer interface
25R, 26D, 41T, 43N, 44G, 45P, 61D, 63V, 68V, 77T, 80Y, 84S, 98T, 103V, 108V, 126I, 127D, 128A, 176L, 177L, 178F, 179C, 180E, 181S, 182L, 183G, 184L, 185F, 186T, 187D, 190Y, 194Y
CDD
cd11372 (RNase_PH_RRP46)
GO term prediction
Biological Process
None predicted.
Molecular Function
None predicted.
Cellular Component
None predicted.