Filter view on
Entry type
Status
Per-residue features
Colour by
Protein
GBC52030.1
Length
1,795 amino acids
Protein family membership
None predicted.
Domains and repeats
-
Domain15 - 260
- Endonuclease/exonuclease/phosphatase (IPR005135)
596 - 898- Reverse transcriptase domain (IPR000477)
1,329 - 1,476- Ribonuclease H-like domain (IPR012337)
- Ribonuclease H domain (IPR002156)
1
200
400
600
800
1000
1200
1400
1600
1795
Detailed signature matches
no IPR
Unintegrated signatures
-
SSF56672 (DNA/RNA p...)
-
cd01650 (RT_nLTR_like)609 - 898
-
cd06222 (RNase_H_like)1,335 - 1,471
-
mobidb-lite (disord...)1,731 - 1,751
Residue annotation
-
putative NTP bindi...702D703I704S705K706A707F761Q818D
-
putative active si...702Dputative active site
702D, 703I, 704S, 705K, 706A, 707F, 761Q, 762G, 816F, 818D, 819D, 894L, 895G
CDD
cd01650 (RT_nLTR_like)703Iputative active site
702D, 703I, 704S, 705K, 706A, 707F, 761Q, 762G, 816F, 818D, 819D, 894L, 895G
CDD
cd01650 (RT_nLTR_like)704Sputative active site
702D, 703I, 704S, 705K, 706A, 707F, 761Q, 762G, 816F, 818D, 819D, 894L, 895G
CDD
cd01650 (RT_nLTR_like)705Kputative active site
702D, 703I, 704S, 705K, 706A, 707F, 761Q, 762G, 816F, 818D, 819D, 894L, 895G
CDD
cd01650 (RT_nLTR_like)706Aputative active site
702D, 703I, 704S, 705K, 706A, 707F, 761Q, 762G, 816F, 818D, 819D, 894L, 895G
CDD
cd01650 (RT_nLTR_like)707Fputative active site
702D, 703I, 704S, 705K, 706A, 707F, 761Q, 762G, 816F, 818D, 819D, 894L, 895G
CDD
cd01650 (RT_nLTR_like)761Qputative active site
702D, 703I, 704S, 705K, 706A, 707F, 761Q, 762G, 816F, 818D, 819D, 894L, 895G
CDD
cd01650 (RT_nLTR_like)762Gputative active site
702D, 703I, 704S, 705K, 706A, 707F, 761Q, 762G, 816F, 818D, 819D, 894L, 895G
CDD
cd01650 (RT_nLTR_like)816Fputative active site
702D, 703I, 704S, 705K, 706A, 707F, 761Q, 762G, 816F, 818D, 819D, 894L, 895G
CDD
cd01650 (RT_nLTR_like)818Dputative active site
702D, 703I, 704S, 705K, 706A, 707F, 761Q, 762G, 816F, 818D, 819D, 894L, 895G
CDD
cd01650 (RT_nLTR_like)819Dputative active site
702D, 703I, 704S, 705K, 706A, 707F, 761Q, 762G, 816F, 818D, 819D, 894L, 895G
CDD
cd01650 (RT_nLTR_like)894Lputative active site
702D, 703I, 704S, 705K, 706A, 707F, 761Q, 762G, 816F, 818D, 819D, 894L, 895G
CDD
cd01650 (RT_nLTR_like)895Gputative active site
702D, 703I, 704S, 705K, 706A, 707F, 761Q, 762G, 816F, 818D, 819D, 894L, 895G
CDD
cd01650 (RT_nLTR_like) -
putative nucleic a...762G
-
active site cd06222
-
RNA/DNA hybrid bin...1,338DRNA/DNA hybrid binding site
1,338D, 1,339G, 1,340S, 1,341F, 1,380A, 1,381L, 1,384E, 1,406D, 1,453K, 1,471K
CDD
cd06222 (RNase_H_like)1,339GRNA/DNA hybrid binding site
1,338D, 1,339G, 1,340S, 1,341F, 1,380A, 1,381L, 1,384E, 1,406D, 1,453K, 1,471K
CDD
cd06222 (RNase_H_like)1,340SRNA/DNA hybrid binding site
1,338D, 1,339G, 1,340S, 1,341F, 1,380A, 1,381L, 1,384E, 1,406D, 1,453K, 1,471K
CDD
cd06222 (RNase_H_like)1,341FRNA/DNA hybrid binding site
1,338D, 1,339G, 1,340S, 1,341F, 1,380A, 1,381L, 1,384E, 1,406D, 1,453K, 1,471K
CDD
cd06222 (RNase_H_like)1,380ARNA/DNA hybrid binding site
1,338D, 1,339G, 1,340S, 1,341F, 1,380A, 1,381L, 1,384E, 1,406D, 1,453K, 1,471K
CDD
cd06222 (RNase_H_like)1,381LRNA/DNA hybrid binding site
1,338D, 1,339G, 1,340S, 1,341F, 1,380A, 1,381L, 1,384E, 1,406D, 1,453K, 1,471K
CDD
cd06222 (RNase_H_like)1,384ERNA/DNA hybrid binding site
1,338D, 1,339G, 1,340S, 1,341F, 1,380A, 1,381L, 1,384E, 1,406D, 1,453K, 1,471K
CDD
cd06222 (RNase_H_like)1,406DRNA/DNA hybrid binding site
1,338D, 1,339G, 1,340S, 1,341F, 1,380A, 1,381L, 1,384E, 1,406D, 1,453K, 1,471K
CDD
cd06222 (RNase_H_like)1,453KRNA/DNA hybrid binding site
1,338D, 1,339G, 1,340S, 1,341F, 1,380A, 1,381L, 1,384E, 1,406D, 1,453K, 1,471K
CDD
cd06222 (RNase_H_like)1,471KRNA/DNA hybrid binding site
1,338D, 1,339G, 1,340S, 1,341F, 1,380A, 1,381L, 1,384E, 1,406D, 1,453K, 1,471K
CDD
cd06222 (RNase_H_like)
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003676 nucleic acid binding
GO:0004523 RNA-DNA hybrid ribonuclease activity
Cellular Component
None predicted.