GBC51216.1

Protein

Length

85 amino acids

Protein family membership

Sm-like protein Lsm6/SmF (IPR016487)
- Small nuclear ribonucleoprotein F (IPR034100)

Domains and repeats

Domain
8 - 79
LSM domain (IPR010920)
LSM domain, eukaryotic/archaea-type (IPR001163)

1 10 20 30 40 50 60 70 80 85

Detailed signature matches

IPR016487

Sm-like protein Lsm6/SmF
1. PIRSF006609 (snRNP_SmF)
  
  1 - 83
  
  PIRSF
  PIRSF006609 (snRNP_SmF)
IPR034100

Small nuclear ribonucleoprotein F
1. cd01722 (Sm_F)
  
  7 - 75
  
  CDD
  cd01722 (Sm_F)
IPR010920

LSM domain
1. SSF50182 (Sm-like r...)
  
  8 - 79
  
  SUPERFAMILY
  SSF50182 (Sm-like ribonucleoproteins)
IPR001163

LSM domain, eukaryotic/archaea-type
1. SM00651 (Sm3)
  
  10 - 75
  
  SMART
  SM00651 (Sm3)
2. PF01423 (LSM)
  
  11 - 73
  
  Pfam
  PF01423 (LSM)

Residue annotation

heptamer interface...

7N

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

8P

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

12L

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

23R

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

24L

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

25K

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

26W

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

30Y

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

38D

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

40Y

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

41M

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

42N

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

43L

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

60L

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

61G

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

62E

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

63V

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

64L

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

65I

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

66R

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

67C

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

68N

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

69N

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

70V

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

71L

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

72Y

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

73I

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

74R

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)

75G

heptamer interface
7N, 8P, 12L, 23R, 24L, 25K, 26W, 30Y, 38D, 40Y, 41M, 42N, 43L, 60L, 61G, 62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I, 74R, 75G
CDD
cd01722 (Sm_F)
Sm1 motif cd01722

20V

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)

21M

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)

22V

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)

23R

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)

24L

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)

25K

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)

26W

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)

28M

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)

29E

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)

30Y

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)

31K

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)

32G

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)

33F

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)

34L

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)

35V

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)

36S

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)

37V

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)

38D

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)

39S

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)

40Y

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)

42N

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)

43L

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)

44Q

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)

45L

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)

46A

Sm1 motif
20V, 21M, 22V, 23R, 24L, 25K, 26W, 28M, 29E, 30Y, 31K, 32G, 33F, 34L, 35V, 36S, 37V, 38D, 39S, 40Y, 42N, 43L, 44Q, 45L, 46A
CDD
cd01722 (Sm_F)
RNA binding site c...

23R

RNA binding site
23R, 25K, 26W, 29E, 39S, 40Y, 41M, 42N, 66R, 67C, 68N, 69N
CDD
cd01722 (Sm_F)

25K

RNA binding site
23R, 25K, 26W, 29E, 39S, 40Y, 41M, 42N, 66R, 67C, 68N, 69N
CDD
cd01722 (Sm_F)

26W

RNA binding site
23R, 25K, 26W, 29E, 39S, 40Y, 41M, 42N, 66R, 67C, 68N, 69N
CDD
cd01722 (Sm_F)

29E

RNA binding site
23R, 25K, 26W, 29E, 39S, 40Y, 41M, 42N, 66R, 67C, 68N, 69N
CDD
cd01722 (Sm_F)

39S

RNA binding site
23R, 25K, 26W, 29E, 39S, 40Y, 41M, 42N, 66R, 67C, 68N, 69N
CDD
cd01722 (Sm_F)

40Y

RNA binding site
23R, 25K, 26W, 29E, 39S, 40Y, 41M, 42N, 66R, 67C, 68N, 69N
CDD
cd01722 (Sm_F)

41M

RNA binding site
23R, 25K, 26W, 29E, 39S, 40Y, 41M, 42N, 66R, 67C, 68N, 69N
CDD
cd01722 (Sm_F)

42N

RNA binding site
23R, 25K, 26W, 29E, 39S, 40Y, 41M, 42N, 66R, 67C, 68N, 69N
CDD
cd01722 (Sm_F)

66R

RNA binding site
23R, 25K, 26W, 29E, 39S, 40Y, 41M, 42N, 66R, 67C, 68N, 69N
CDD
cd01722 (Sm_F)

67C

RNA binding site
23R, 25K, 26W, 29E, 39S, 40Y, 41M, 42N, 66R, 67C, 68N, 69N
CDD
cd01722 (Sm_F)

68N

RNA binding site
23R, 25K, 26W, 29E, 39S, 40Y, 41M, 42N, 66R, 67C, 68N, 69N
CDD
cd01722 (Sm_F)

69N

RNA binding site
23R, 25K, 26W, 29E, 39S, 40Y, 41M, 42N, 66R, 67C, 68N, 69N
CDD
cd01722 (Sm_F)
Sm2 motif cd01722

62E

Sm2 motif
62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I
CDD
cd01722 (Sm_F)

63V

Sm2 motif
62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I
CDD
cd01722 (Sm_F)

64L

Sm2 motif
62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I
CDD
cd01722 (Sm_F)

65I

Sm2 motif
62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I
CDD
cd01722 (Sm_F)

66R

Sm2 motif
62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I
CDD
cd01722 (Sm_F)

67C

Sm2 motif
62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I
CDD
cd01722 (Sm_F)

68N

Sm2 motif
62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I
CDD
cd01722 (Sm_F)

69N

Sm2 motif
62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I
CDD
cd01722 (Sm_F)

70V

Sm2 motif
62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I
CDD
cd01722 (Sm_F)

71L

Sm2 motif
62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I
CDD
cd01722 (Sm_F)

72Y

Sm2 motif
62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I
CDD
cd01722 (Sm_F)

73I

Sm2 motif
62E, 63V, 64L, 65I, 66R, 67C, 68N, 69N, 70V, 71L, 72Y, 73I
CDD
cd01722 (Sm_F)

GO term prediction

Biological Process

GO:0000387 spliceosomal snRNP assembly
GO:0000398 mRNA splicing, via spliceosome

Molecular Function

None predicted.

Cellular Component

GO:0005681 spliceosomal complex
GO:0005732 small nucleolar ribonucleoprotein complex

Filter view on

Entry type

Status

Per-residue features