Filter view on
Entry type
Status
Per-residue features
Colour by
Protein
GBC47542.1
Length
104 amino acids
Protein family membership
None predicted.
Domains and repeats
-
Domain17 - 99
- LSM domain (IPR010920)
- LSM domain, eukaryotic/archaea-type (IPR001163)
- Sm-like protein Lsm3 (IPR034105)
- LSM domain, eukaryotic/archaea-type (IPR001163)
- LSM domain (IPR010920)
1
10
20
30
40
50
60
70
80
90
104
Detailed signature matches
Residue annotation
-
putative oligomer ...22Vputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)25Sputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)26Lputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)31Yputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)33Kputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)34Lputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)35Rputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)38Rputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)40Lputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)45Hputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)46Aputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)47Yputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)48Dputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)51Lputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)52Nputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)54Vputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)85Mputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)86Lputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)87Fputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)88Vputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)89Rputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)90Gputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)91Dputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)92Gputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)93Vputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)94Iputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)95Lputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)96Vputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3)97Sputative oligomer interface
22V, 25S, 26L, 31Y, 33K, 34L, 35R, 38R, 40L, 45H, 46A, 47Y, 48D, 51L, 52N, 54V, 85M, 86L, 87F, 88V, 89R, 90G, 91D, 92G, 93V, 94I, 95L, 96V, 97S
CDD
cd01730 (LSm3) -
Sm1 motif cd0173030ISm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3)31YSm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3)32VSm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3)33KSm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3)34LSm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3)35RSm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3)36GSm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3)38RSm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3)39ESm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3)40LSm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3)41RSm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3)42GSm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3)43KSm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3)44LSm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3)45HSm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3)46ASm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3)47YSm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3)48DSm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3)49GSm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3)50HSm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3)52NSm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3)53MSm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3)54VSm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3)55LSm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3)56SSm1 motif
30I, 31Y, 32V, 33K, 34L, 35R, 36G, 38R, 39E, 40L, 41R, 42G, 43K, 44L, 45H, 46A, 47Y, 48D, 49G, 50H, 52N, 53M, 54V, 55L, 56S
CDD
cd01730 (LSm3) -
putative RNA bindi...
-
Sm2 motif cd0173085M86L87F88V89R90G91D92G93V94I95L96V
GO term prediction
Biological Process
GO:0000398 mRNA splicing, via spliceosome
GO:0000956 nuclear-transcribed mRNA catabolic process
Molecular Function
None predicted.
Cellular Component
None predicted.