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Entry type
Status
Per-residue features
Colour by
Protein
GBC46041.1
Length
179 amino acids
Protein family membership
None predicted.
Domains and repeats
-
Domain1 - 81
- RNA polymerase Rpb7, N-terminal (IPR005576)
-
Domain81 - 175
- Nucleic acid-binding, OB-fold (IPR012340)
- S1 domain (IPR003029)
- Nucleic acid-binding, OB-fold (IPR012340)
1
20
40
60
80
100
120
140
160
179
Detailed signature matches
no IPR
Residue annotation
-
Rpb4 interaction s...2FRpb4 interaction site
2F, 3F, 5K, 8H, 35E, 36G, 42F, 46I, 48V, 74A, 76R, 78I, 81K, 83F, 84K
CDD
cd04329 (RNAP_II_Rpb7_N)3FRpb4 interaction site
2F, 3F, 5K, 8H, 35E, 36G, 42F, 46I, 48V, 74A, 76R, 78I, 81K, 83F, 84K
CDD
cd04329 (RNAP_II_Rpb7_N)5KRpb4 interaction site
2F, 3F, 5K, 8H, 35E, 36G, 42F, 46I, 48V, 74A, 76R, 78I, 81K, 83F, 84K
CDD
cd04329 (RNAP_II_Rpb7_N)8HRpb4 interaction site
2F, 3F, 5K, 8H, 35E, 36G, 42F, 46I, 48V, 74A, 76R, 78I, 81K, 83F, 84K
CDD
cd04329 (RNAP_II_Rpb7_N)35ERpb4 interaction site
2F, 3F, 5K, 8H, 35E, 36G, 42F, 46I, 48V, 74A, 76R, 78I, 81K, 83F, 84K
CDD
cd04329 (RNAP_II_Rpb7_N)36GRpb4 interaction site
2F, 3F, 5K, 8H, 35E, 36G, 42F, 46I, 48V, 74A, 76R, 78I, 81K, 83F, 84K
CDD
cd04329 (RNAP_II_Rpb7_N)42FRpb4 interaction site
2F, 3F, 5K, 8H, 35E, 36G, 42F, 46I, 48V, 74A, 76R, 78I, 81K, 83F, 84K
CDD
cd04329 (RNAP_II_Rpb7_N)46IRpb4 interaction site
2F, 3F, 5K, 8H, 35E, 36G, 42F, 46I, 48V, 74A, 76R, 78I, 81K, 83F, 84K
CDD
cd04329 (RNAP_II_Rpb7_N)48VRpb4 interaction site
2F, 3F, 5K, 8H, 35E, 36G, 42F, 46I, 48V, 74A, 76R, 78I, 81K, 83F, 84K
CDD
cd04329 (RNAP_II_Rpb7_N)74ARpb4 interaction site
2F, 3F, 5K, 8H, 35E, 36G, 42F, 46I, 48V, 74A, 76R, 78I, 81K, 83F, 84K
CDD
cd04329 (RNAP_II_Rpb7_N)76RRpb4 interaction site
2F, 3F, 5K, 8H, 35E, 36G, 42F, 46I, 48V, 74A, 76R, 78I, 81K, 83F, 84K
CDD
cd04329 (RNAP_II_Rpb7_N)78IRpb4 interaction site
2F, 3F, 5K, 8H, 35E, 36G, 42F, 46I, 48V, 74A, 76R, 78I, 81K, 83F, 84K
CDD
cd04329 (RNAP_II_Rpb7_N)81KRpb4 interaction site
2F, 3F, 5K, 8H, 35E, 36G, 42F, 46I, 48V, 74A, 76R, 78I, 81K, 83F, 84K
CDD
cd04329 (RNAP_II_Rpb7_N)83FRpb4 interaction site
2F, 3F, 5K, 8H, 35E, 36G, 42F, 46I, 48V, 74A, 76R, 78I, 81K, 83F, 84K
CDD
cd04329 (RNAP_II_Rpb7_N)84KRpb4 interaction site
2F, 3F, 5K, 8H, 35E, 36G, 42F, 46I, 48V, 74A, 76R, 78I, 81K, 83F, 84K
CDD
cd04329 (RNAP_II_Rpb7_N) -
Rpb6 interaction s...16A18F59Q66V67G
-
Rpb1 interaction s...18F19T20Q22F23E60G61K62V69A
-
RPB7- RPB4 dimer i...84KRPB7- RPB4 dimer interface
84K, 87V, 89D, 91V, 103D, 106P, 145G, 147H, 149R, 172F
CDD
cd04462 (S1_RNAPII_Rpb7)87VRPB7- RPB4 dimer interface
84K, 87V, 89D, 91V, 103D, 106P, 145G, 147H, 149R, 172F
CDD
cd04462 (S1_RNAPII_Rpb7)89DRPB7- RPB4 dimer interface
84K, 87V, 89D, 91V, 103D, 106P, 145G, 147H, 149R, 172F
CDD
cd04462 (S1_RNAPII_Rpb7)91VRPB7- RPB4 dimer interface
84K, 87V, 89D, 91V, 103D, 106P, 145G, 147H, 149R, 172F
CDD
cd04462 (S1_RNAPII_Rpb7)103DRPB7- RPB4 dimer interface
84K, 87V, 89D, 91V, 103D, 106P, 145G, 147H, 149R, 172F
CDD
cd04462 (S1_RNAPII_Rpb7)106PRPB7- RPB4 dimer interface
84K, 87V, 89D, 91V, 103D, 106P, 145G, 147H, 149R, 172F
CDD
cd04462 (S1_RNAPII_Rpb7)145GRPB7- RPB4 dimer interface
84K, 87V, 89D, 91V, 103D, 106P, 145G, 147H, 149R, 172F
CDD
cd04462 (S1_RNAPII_Rpb7)147HRPB7- RPB4 dimer interface
84K, 87V, 89D, 91V, 103D, 106P, 145G, 147H, 149R, 172F
CDD
cd04462 (S1_RNAPII_Rpb7)149RRPB7- RPB4 dimer interface
84K, 87V, 89D, 91V, 103D, 106P, 145G, 147H, 149R, 172F
CDD
cd04462 (S1_RNAPII_Rpb7)172FRPB7- RPB4 dimer interface
84K, 87V, 89D, 91V, 103D, 106P, 145G, 147H, 149R, 172F
CDD
cd04462 (S1_RNAPII_Rpb7) -
RNA binding site c...93SRNA binding site
93S, 96N, 97K, 101F, 110F, 112S, 114H, 156R, 158D, 163F
CDD
cd04462 (S1_RNAPII_Rpb7)96NRNA binding site
93S, 96N, 97K, 101F, 110F, 112S, 114H, 156R, 158D, 163F
CDD
cd04462 (S1_RNAPII_Rpb7)97KRNA binding site
93S, 96N, 97K, 101F, 110F, 112S, 114H, 156R, 158D, 163F
CDD
cd04462 (S1_RNAPII_Rpb7)101FRNA binding site
93S, 96N, 97K, 101F, 110F, 112S, 114H, 156R, 158D, 163F
CDD
cd04462 (S1_RNAPII_Rpb7)110FRNA binding site
93S, 96N, 97K, 101F, 110F, 112S, 114H, 156R, 158D, 163F
CDD
cd04462 (S1_RNAPII_Rpb7)112SRNA binding site
93S, 96N, 97K, 101F, 110F, 112S, 114H, 156R, 158D, 163F
CDD
cd04462 (S1_RNAPII_Rpb7)114HRNA binding site
93S, 96N, 97K, 101F, 110F, 112S, 114H, 156R, 158D, 163F
CDD
cd04462 (S1_RNAPII_Rpb7)156RRNA binding site
93S, 96N, 97K, 101F, 110F, 112S, 114H, 156R, 158D, 163F
CDD
cd04462 (S1_RNAPII_Rpb7)158DRNA binding site
93S, 96N, 97K, 101F, 110F, 112S, 114H, 156R, 158D, 163F
CDD
cd04462 (S1_RNAPII_Rpb7)163FRNA binding site
93S, 96N, 97K, 101F, 110F, 112S, 114H, 156R, 158D, 163F
CDD
cd04462 (S1_RNAPII_Rpb7)
GO term prediction
Biological Process
GO:0006351 transcription, DNA-templated
Molecular Function
GO:0003676 nucleic acid binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
Cellular Component
None predicted.