GBC42391.1

Protein

Length

103 amino acids

Protein family membership

U6 snRNA-associated Sm-like protein LSm2 (IPR016654)

Domains and repeats

Domain
3 - 95
LSM domain (IPR010920)
LSM domain, eukaryotic/archaea-type (IPR001163)

1 10 20 30 40 50 60 70 80 90 103

Detailed signature matches

IPR016654

U6 snRNA-associated Sm-like protein LSm2
1. cd01725 (LSm2)
  
  2 - 90
  
  CDD
  cd01725 (LSm2)
2. PIRSF016394 (Lsm2)
  
  1 - 95
  
  PIRSF
  PIRSF016394 (Lsm2)
IPR010920

LSM domain
1. SSF50182 (Sm-like r...)
  
  3 - 95
  
  SUPERFAMILY
  SSF50182 (Sm-like ribonucleoproteins)
IPR001163

LSM domain, eukaryotic/archaea-type
1. SM00651 (Sm3)
  
  5 - 72
  
  SMART
  SM00651 (Sm3)
2. PF01423 (LSM)
  
  6 - 71
  
  Pfam
  PF01423 (LSM)

Residue annotation

putative oligomer ...

7F

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

10L

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

11I

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

16T

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

18E

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

19L

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

20K

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

23L

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

25I

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

30K

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

31S

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

32V

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

33D

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

36L

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

37N

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

39K

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

59N

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

60C

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

61F

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

62I

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

63R

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

64G

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

65S

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

66V

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

67V

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

68R

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

69Y

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

70V

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)

71Q

putative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)
Sm1 motif cd01725

15V

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)

16T

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)

17V

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)

18E

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)

19L

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)

20K

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)

21N

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)

23L

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)

24A

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)

25I

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)

26T

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)

27G

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)

28I

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)

29L

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)

30K

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)

31S

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)

32V

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)

33D

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)

34Q

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)

35F

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)

37N

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)

38I

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)

39K

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)

40L

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)

41D

Sm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)
putative RNA bindi...

33D

putative RNA binding site
33D, 35F, 63R
CDD
cd01725 (LSm2)

35F

putative RNA binding site
33D, 35F, 63R
CDD
cd01725 (LSm2)

63R

putative RNA binding site
33D, 35F, 63R
CDD
cd01725 (LSm2)
Sm2 motif cd01725

59N

Sm2 motif
59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V
CDD
cd01725 (LSm2)

60C

Sm2 motif
59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V
CDD
cd01725 (LSm2)

61F

Sm2 motif
59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V
CDD
cd01725 (LSm2)

62I

Sm2 motif
59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V
CDD
cd01725 (LSm2)

63R

Sm2 motif
59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V
CDD
cd01725 (LSm2)

64G

Sm2 motif
59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V
CDD
cd01725 (LSm2)

65S

Sm2 motif
59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V
CDD
cd01725 (LSm2)

66V

Sm2 motif
59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V
CDD
cd01725 (LSm2)

67V

Sm2 motif
59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V
CDD
cd01725 (LSm2)

68R

Sm2 motif
59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V
CDD
cd01725 (LSm2)

69Y

Sm2 motif
59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V
CDD
cd01725 (LSm2)

70V

Sm2 motif
59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V
CDD
cd01725 (LSm2)

GO term prediction

Biological Process

GO:0006397 mRNA processing

Molecular Function

None predicted.

Cellular Component

None predicted.

Filter view on

Entry type

Status

Per-residue features

GBC42391.1

Protein family membership

Domains and repeats

Detailed signature matches

Residue annotation

GO term prediction

Biological Process

Molecular Function

Cellular Component