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Entry type
Status
Per-residue features
Colour by
Protein
GBC42391.1
Length
103 amino acids
Protein family membership
- U6 snRNA-associated Sm-like protein LSm2 (IPR016654)
Domains and repeats
-
Domain3 - 95
- LSM domain (IPR010920)
- LSM domain, eukaryotic/archaea-type (IPR001163)
- LSM domain (IPR010920)
1
10
20
30
40
50
60
70
80
90
103
Detailed signature matches
-
-
cd01725 (LSm2)2 - 90
-
PIRSF016394 (Lsm2)1 - 95
-
Residue annotation
-
putative oligomer ...7Fputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)10Lputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)11Iputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)16Tputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)18Eputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)19Lputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)20Kputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)23Lputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)25Iputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)30Kputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)31Sputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)32Vputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)33Dputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)36Lputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)37Nputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)39Kputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)59Nputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)60Cputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)61Fputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)62Iputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)63Rputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)64Gputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)65Sputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)66Vputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)67Vputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)68Rputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)69Yputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)70Vputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2)71Qputative oligomer interface
7F, 10L, 11I, 16T, 18E, 19L, 20K, 23L, 25I, 30K, 31S, 32V, 33D, 36L, 37N, 39K, 59N, 60C, 61F, 62I, 63R, 64G, 65S, 66V, 67V, 68R, 69Y, 70V, 71Q
CDD
cd01725 (LSm2) -
Sm1 motif cd0172515VSm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)16TSm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)17VSm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)18ESm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)19LSm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)20KSm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)21NSm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)23LSm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)24ASm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)25ISm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)26TSm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)27GSm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)28ISm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)29LSm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)30KSm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)31SSm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)32VSm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)33DSm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)34QSm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)35FSm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)37NSm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)38ISm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)39KSm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)40LSm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2)41DSm1 motif
15V, 16T, 17V, 18E, 19L, 20K, 21N, 23L, 24A, 25I, 26T, 27G, 28I, 29L, 30K, 31S, 32V, 33D, 34Q, 35F, 37N, 38I, 39K, 40L, 41D
CDD
cd01725 (LSm2) -
putative RNA bindi...
-
Sm2 motif cd0172559N60C61F62I63R64G65S66V67V68R69Y70V
GO term prediction
Biological Process
GO:0006397 mRNA processing
Molecular Function
None predicted.
Cellular Component
None predicted.