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Entry type
Status
Per-residue features
GBC41848.1
Protein family membership
- Cobalamin-dependent methionine synthase (IPR011822)
Domains and repeats
-
Domain159 - 556
- Homocysteine-binding domain (IPR003726)
813 - 1,036- Methionine synthase, B12-binding domain (IPR033706)
-
Domain513 - 787
- Dihydropteroate synthase-like (IPR011005)
- Pterin-binding domain (IPR000489)
804 - 898907 - 1,060- Cobalamin (vitamin B12)-binding domain (IPR006158)
1,062 - 1,397 - Dihydropteroate synthase-like (IPR011005)
Detailed signature matches
-
-
167 - 1,364
-
PIRSF000381 (Met_sy...)156 - 1,367
-
Residue annotation
-
substrate binding ...521Nsubstrate binding pocket
521N, 591D, 612N, 614I, 640M, 679D, 718G, 722L, 753I, 755N
CDD
cd00740 (MeTr)591Dsubstrate binding pocket
521N, 591D, 612N, 614I, 640M, 679D, 718G, 722L, 753I, 755N
CDD
cd00740 (MeTr)612Nsubstrate binding pocket
521N, 591D, 612N, 614I, 640M, 679D, 718G, 722L, 753I, 755N
CDD
cd00740 (MeTr)614Isubstrate binding pocket
521N, 591D, 612N, 614I, 640M, 679D, 718G, 722L, 753I, 755N
CDD
cd00740 (MeTr)640Msubstrate binding pocket
521N, 591D, 612N, 614I, 640M, 679D, 718G, 722L, 753I, 755N
CDD
cd00740 (MeTr)679Dsubstrate binding pocket
521N, 591D, 612N, 614I, 640M, 679D, 718G, 722L, 753I, 755N
CDD
cd00740 (MeTr)718Gsubstrate binding pocket
521N, 591D, 612N, 614I, 640M, 679D, 718G, 722L, 753I, 755N
CDD
cd00740 (MeTr)722Lsubstrate binding pocket
521N, 591D, 612N, 614I, 640M, 679D, 718G, 722L, 753I, 755N
CDD
cd00740 (MeTr)753Isubstrate binding pocket
521N, 591D, 612N, 614I, 640M, 679D, 718G, 722L, 753I, 755N
CDD
cd00740 (MeTr)755Nsubstrate binding pocket
521N, 591D, 612N, 614I, 640M, 679D, 718G, 722L, 753I, 755N
CDD
cd00740 (MeTr) -
B12 binding site c...848EB12 binding site
848E, 852M, 869L, 872V, 921G, 922D, 923V, 924H, 925D, 926I, 927G, 930I, 967G, 968L, 969S, 971L, 972I, 973T, 1,000A, 1,022V, 1,025A, 1,028S
CDD
cd02069 (methionine_synthase_B12_BD)852MB12 binding site
848E, 852M, 869L, 872V, 921G, 922D, 923V, 924H, 925D, 926I, 927G, 930I, 967G, 968L, 969S, 971L, 972I, 973T, 1,000A, 1,022V, 1,025A, 1,028S
CDD
cd02069 (methionine_synthase_B12_BD)869LB12 binding site
848E, 852M, 869L, 872V, 921G, 922D, 923V, 924H, 925D, 926I, 927G, 930I, 967G, 968L, 969S, 971L, 972I, 973T, 1,000A, 1,022V, 1,025A, 1,028S
CDD
cd02069 (methionine_synthase_B12_BD)872VB12 binding site
848E, 852M, 869L, 872V, 921G, 922D, 923V, 924H, 925D, 926I, 927G, 930I, 967G, 968L, 969S, 971L, 972I, 973T, 1,000A, 1,022V, 1,025A, 1,028S
CDD
cd02069 (methionine_synthase_B12_BD)921GB12 binding site
848E, 852M, 869L, 872V, 921G, 922D, 923V, 924H, 925D, 926I, 927G, 930I, 967G, 968L, 969S, 971L, 972I, 973T, 1,000A, 1,022V, 1,025A, 1,028S
CDD
cd02069 (methionine_synthase_B12_BD)922DB12 binding site
848E, 852M, 869L, 872V, 921G, 922D, 923V, 924H, 925D, 926I, 927G, 930I, 967G, 968L, 969S, 971L, 972I, 973T, 1,000A, 1,022V, 1,025A, 1,028S
CDD
cd02069 (methionine_synthase_B12_BD)923VB12 binding site
848E, 852M, 869L, 872V, 921G, 922D, 923V, 924H, 925D, 926I, 927G, 930I, 967G, 968L, 969S, 971L, 972I, 973T, 1,000A, 1,022V, 1,025A, 1,028S
CDD
cd02069 (methionine_synthase_B12_BD)924HB12 binding site
848E, 852M, 869L, 872V, 921G, 922D, 923V, 924H, 925D, 926I, 927G, 930I, 967G, 968L, 969S, 971L, 972I, 973T, 1,000A, 1,022V, 1,025A, 1,028S
CDD
cd02069 (methionine_synthase_B12_BD)925DB12 binding site
848E, 852M, 869L, 872V, 921G, 922D, 923V, 924H, 925D, 926I, 927G, 930I, 967G, 968L, 969S, 971L, 972I, 973T, 1,000A, 1,022V, 1,025A, 1,028S
CDD
cd02069 (methionine_synthase_B12_BD)926IB12 binding site
848E, 852M, 869L, 872V, 921G, 922D, 923V, 924H, 925D, 926I, 927G, 930I, 967G, 968L, 969S, 971L, 972I, 973T, 1,000A, 1,022V, 1,025A, 1,028S
CDD
cd02069 (methionine_synthase_B12_BD)927GB12 binding site
848E, 852M, 869L, 872V, 921G, 922D, 923V, 924H, 925D, 926I, 927G, 930I, 967G, 968L, 969S, 971L, 972I, 973T, 1,000A, 1,022V, 1,025A, 1,028S
CDD
cd02069 (methionine_synthase_B12_BD)930IB12 binding site
848E, 852M, 869L, 872V, 921G, 922D, 923V, 924H, 925D, 926I, 927G, 930I, 967G, 968L, 969S, 971L, 972I, 973T, 1,000A, 1,022V, 1,025A, 1,028S
CDD
cd02069 (methionine_synthase_B12_BD)967GB12 binding site
848E, 852M, 869L, 872V, 921G, 922D, 923V, 924H, 925D, 926I, 927G, 930I, 967G, 968L, 969S, 971L, 972I, 973T, 1,000A, 1,022V, 1,025A, 1,028S
CDD
cd02069 (methionine_synthase_B12_BD)968LB12 binding site
848E, 852M, 869L, 872V, 921G, 922D, 923V, 924H, 925D, 926I, 927G, 930I, 967G, 968L, 969S, 971L, 972I, 973T, 1,000A, 1,022V, 1,025A, 1,028S
CDD
cd02069 (methionine_synthase_B12_BD)969SB12 binding site
848E, 852M, 869L, 872V, 921G, 922D, 923V, 924H, 925D, 926I, 927G, 930I, 967G, 968L, 969S, 971L, 972I, 973T, 1,000A, 1,022V, 1,025A, 1,028S
CDD
cd02069 (methionine_synthase_B12_BD)971LB12 binding site
848E, 852M, 869L, 872V, 921G, 922D, 923V, 924H, 925D, 926I, 927G, 930I, 967G, 968L, 969S, 971L, 972I, 973T, 1,000A, 1,022V, 1,025A, 1,028S
CDD
cd02069 (methionine_synthase_B12_BD)972IB12 binding site
848E, 852M, 869L, 872V, 921G, 922D, 923V, 924H, 925D, 926I, 927G, 930I, 967G, 968L, 969S, 971L, 972I, 973T, 1,000A, 1,022V, 1,025A, 1,028S
CDD
cd02069 (methionine_synthase_B12_BD)973TB12 binding site
848E, 852M, 869L, 872V, 921G, 922D, 923V, 924H, 925D, 926I, 927G, 930I, 967G, 968L, 969S, 971L, 972I, 973T, 1,000A, 1,022V, 1,025A, 1,028S
CDD
cd02069 (methionine_synthase_B12_BD)1,000AB12 binding site
848E, 852M, 869L, 872V, 921G, 922D, 923V, 924H, 925D, 926I, 927G, 930I, 967G, 968L, 969S, 971L, 972I, 973T, 1,000A, 1,022V, 1,025A, 1,028S
CDD
cd02069 (methionine_synthase_B12_BD)1,022VB12 binding site
848E, 852M, 869L, 872V, 921G, 922D, 923V, 924H, 925D, 926I, 927G, 930I, 967G, 968L, 969S, 971L, 972I, 973T, 1,000A, 1,022V, 1,025A, 1,028S
CDD
cd02069 (methionine_synthase_B12_BD)1,025AB12 binding site
848E, 852M, 869L, 872V, 921G, 922D, 923V, 924H, 925D, 926I, 927G, 930I, 967G, 968L, 969S, 971L, 972I, 973T, 1,000A, 1,022V, 1,025A, 1,028S
CDD
cd02069 (methionine_synthase_B12_BD)1,028SB12 binding site
848E, 852M, 869L, 872V, 921G, 922D, 923V, 924H, 925D, 926I, 927G, 930I, 967G, 968L, 969S, 971L, 972I, 973T, 1,000A, 1,022V, 1,025A, 1,028S
CDD
cd02069 (methionine_synthase_B12_BD) -
cobalt ligand cd02...924H
GO term prediction
Biological Process
GO:0009086 methionine biosynthetic process
GO:0042558 pteridine-containing compound metabolic process
GO:0044237 cellular metabolic process
Molecular Function
GO:0008270 zinc ion binding
GO:0008705 methionine synthase activity
GO:0008898 S-adenosylmethionine-homocysteine S-methyltransferase activity
GO:0031419 cobalamin binding
GO:0046872 metal ion binding
Cellular Component
GO:0005622 intracellular