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Entry type
Status
Per-residue features
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Protein
GBC41820.1
Length
2,208 amino acids
Protein family membership
None predicted.
Domains and repeats
-
Domain112 - 259
- RNA recognition motif domain (IPR000504)
536 - 745- Endonuclease/exonuclease/phosphatase (IPR005135)
1,050 - 1,352- Reverse transcriptase domain (IPR000477)
1,717 - 1,867- Ribonuclease H-like domain (IPR012337)
- Ribonuclease H domain (IPR002156)
1
500
1000
1500
2208
Detailed signature matches
no IPR
Unintegrated signatures
-
388 - 408
-
cd00590 (RRM_SF)116 - 168
-
cd01650 (RT_nLTR_like)1,068 - 1,352
-
mobidb-lite (disord...)312 - 381
Residue annotation
-
putative NTP bindi...1,153Dputative NTP binding site
1,153D, 1,154I, 1,155S, 1,156K, 1,157A, 1,158F, 1,212Q, 1,266D
CDD
cd01650 (RT_nLTR_like)1,154Iputative NTP binding site
1,153D, 1,154I, 1,155S, 1,156K, 1,157A, 1,158F, 1,212Q, 1,266D
CDD
cd01650 (RT_nLTR_like)1,155Sputative NTP binding site
1,153D, 1,154I, 1,155S, 1,156K, 1,157A, 1,158F, 1,212Q, 1,266D
CDD
cd01650 (RT_nLTR_like)1,156Kputative NTP binding site
1,153D, 1,154I, 1,155S, 1,156K, 1,157A, 1,158F, 1,212Q, 1,266D
CDD
cd01650 (RT_nLTR_like)1,157Aputative NTP binding site
1,153D, 1,154I, 1,155S, 1,156K, 1,157A, 1,158F, 1,212Q, 1,266D
CDD
cd01650 (RT_nLTR_like)1,158Fputative NTP binding site
1,153D, 1,154I, 1,155S, 1,156K, 1,157A, 1,158F, 1,212Q, 1,266D
CDD
cd01650 (RT_nLTR_like)1,212Qputative NTP binding site
1,153D, 1,154I, 1,155S, 1,156K, 1,157A, 1,158F, 1,212Q, 1,266D
CDD
cd01650 (RT_nLTR_like)1,266Dputative NTP binding site
1,153D, 1,154I, 1,155S, 1,156K, 1,157A, 1,158F, 1,212Q, 1,266D
CDD
cd01650 (RT_nLTR_like) -
putative active si...1,153Dputative active site
1,153D, 1,154I, 1,155S, 1,156K, 1,157A, 1,158F, 1,212Q, 1,213G, 1,264F, 1,266D, 1,267D, 1,348L, 1,349G
CDD
cd01650 (RT_nLTR_like)1,154Iputative active site
1,153D, 1,154I, 1,155S, 1,156K, 1,157A, 1,158F, 1,212Q, 1,213G, 1,264F, 1,266D, 1,267D, 1,348L, 1,349G
CDD
cd01650 (RT_nLTR_like)1,155Sputative active site
1,153D, 1,154I, 1,155S, 1,156K, 1,157A, 1,158F, 1,212Q, 1,213G, 1,264F, 1,266D, 1,267D, 1,348L, 1,349G
CDD
cd01650 (RT_nLTR_like)1,156Kputative active site
1,153D, 1,154I, 1,155S, 1,156K, 1,157A, 1,158F, 1,212Q, 1,213G, 1,264F, 1,266D, 1,267D, 1,348L, 1,349G
CDD
cd01650 (RT_nLTR_like)1,157Aputative active site
1,153D, 1,154I, 1,155S, 1,156K, 1,157A, 1,158F, 1,212Q, 1,213G, 1,264F, 1,266D, 1,267D, 1,348L, 1,349G
CDD
cd01650 (RT_nLTR_like)1,158Fputative active site
1,153D, 1,154I, 1,155S, 1,156K, 1,157A, 1,158F, 1,212Q, 1,213G, 1,264F, 1,266D, 1,267D, 1,348L, 1,349G
CDD
cd01650 (RT_nLTR_like)1,212Qputative active site
1,153D, 1,154I, 1,155S, 1,156K, 1,157A, 1,158F, 1,212Q, 1,213G, 1,264F, 1,266D, 1,267D, 1,348L, 1,349G
CDD
cd01650 (RT_nLTR_like)1,213Gputative active site
1,153D, 1,154I, 1,155S, 1,156K, 1,157A, 1,158F, 1,212Q, 1,213G, 1,264F, 1,266D, 1,267D, 1,348L, 1,349G
CDD
cd01650 (RT_nLTR_like)1,264Fputative active site
1,153D, 1,154I, 1,155S, 1,156K, 1,157A, 1,158F, 1,212Q, 1,213G, 1,264F, 1,266D, 1,267D, 1,348L, 1,349G
CDD
cd01650 (RT_nLTR_like)1,266Dputative active site
1,153D, 1,154I, 1,155S, 1,156K, 1,157A, 1,158F, 1,212Q, 1,213G, 1,264F, 1,266D, 1,267D, 1,348L, 1,349G
CDD
cd01650 (RT_nLTR_like)1,267Dputative active site
1,153D, 1,154I, 1,155S, 1,156K, 1,157A, 1,158F, 1,212Q, 1,213G, 1,264F, 1,266D, 1,267D, 1,348L, 1,349G
CDD
cd01650 (RT_nLTR_like)1,348Lputative active site
1,153D, 1,154I, 1,155S, 1,156K, 1,157A, 1,158F, 1,212Q, 1,213G, 1,264F, 1,266D, 1,267D, 1,348L, 1,349G
CDD
cd01650 (RT_nLTR_like)1,349Gputative active site
1,153D, 1,154I, 1,155S, 1,156K, 1,157A, 1,158F, 1,212Q, 1,213G, 1,264F, 1,266D, 1,267D, 1,348L, 1,349G
CDD
cd01650 (RT_nLTR_like) -
putative nucleic a...1,213G
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003676 nucleic acid binding
GO:0004523 RNA-DNA hybrid ribonuclease activity
Cellular Component
None predicted.