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Protein

GBC41221.1

Length

265 amino acids

Protein family membership

None predicted.

Domains and repeats

Domain
1 - 159
Reverse transcriptase domain (IPR000477)

1 50 100 150 200 265

Detailed signature matches

IPR000477

Reverse transcriptase domain

PF00078 (RVT_1)

6 - 103

Pfam
PF00078 (RVT_1)
PS50878 (RT_POL)

1 - 159

PROSITE profiles
PS50878 (RT_POL)

no IPR

Unintegrated signatures

SSF56672 (DNA/RNA p...)

2 - 250

SUPERFAMILY
SSF56672 (DNA/RNA polymerases)
cd01647 (RT_LTR)

1 - 107

CDD
cd01647 (RT_LTR)
cd09274 (RNase_HI_R...)

145 - 265

CDD
cd09274 (RNase_HI_RT_Ty3)

Residue annotation

putative NTP bindi...

15D

putative NTP binding site
15D, 16L, 17A, 18S, 19G, 20Y, 49F, 79D
CDD
cd01647 (RT_LTR)

16L

putative NTP binding site
15D, 16L, 17A, 18S, 19G, 20Y, 49F, 79D
CDD
cd01647 (RT_LTR)

17A

putative NTP binding site
15D, 16L, 17A, 18S, 19G, 20Y, 49F, 79D
CDD
cd01647 (RT_LTR)

18S

putative NTP binding site
15D, 16L, 17A, 18S, 19G, 20Y, 49F, 79D
CDD
cd01647 (RT_LTR)

19G

putative NTP binding site
15D, 16L, 17A, 18S, 19G, 20Y, 49F, 79D
CDD
cd01647 (RT_LTR)

20Y

putative NTP binding site
15D, 16L, 17A, 18S, 19G, 20Y, 49F, 79D
CDD
cd01647 (RT_LTR)

49F

putative NTP binding site
15D, 16L, 17A, 18S, 19G, 20Y, 49F, 79D
CDD
cd01647 (RT_LTR)

79D

putative NTP binding site
15D, 16L, 17A, 18S, 19G, 20Y, 49F, 79D
CDD
cd01647 (RT_LTR)
putative active si...

15D

putative active site
15D, 16L, 17A, 18S, 19G, 20Y, 49F, 50G, 77Y, 79D, 80D
CDD
cd01647 (RT_LTR)

16L

putative active site
15D, 16L, 17A, 18S, 19G, 20Y, 49F, 50G, 77Y, 79D, 80D
CDD
cd01647 (RT_LTR)

17A

putative active site
15D, 16L, 17A, 18S, 19G, 20Y, 49F, 50G, 77Y, 79D, 80D
CDD
cd01647 (RT_LTR)

18S

putative active site
15D, 16L, 17A, 18S, 19G, 20Y, 49F, 50G, 77Y, 79D, 80D
CDD
cd01647 (RT_LTR)

19G

putative active site
15D, 16L, 17A, 18S, 19G, 20Y, 49F, 50G, 77Y, 79D, 80D
CDD
cd01647 (RT_LTR)

20Y

putative active site
15D, 16L, 17A, 18S, 19G, 20Y, 49F, 50G, 77Y, 79D, 80D
CDD
cd01647 (RT_LTR)

49F

putative active site
15D, 16L, 17A, 18S, 19G, 20Y, 49F, 50G, 77Y, 79D, 80D
CDD
cd01647 (RT_LTR)

50G

putative active site
15D, 16L, 17A, 18S, 19G, 20Y, 49F, 50G, 77Y, 79D, 80D
CDD
cd01647 (RT_LTR)

77Y

putative active site
15D, 16L, 17A, 18S, 19G, 20Y, 49F, 50G, 77Y, 79D, 80D
CDD
cd01647 (RT_LTR)

79D

putative active site
15D, 16L, 17A, 18S, 19G, 20Y, 49F, 50G, 77Y, 79D, 80D
CDD
cd01647 (RT_LTR)

80D

putative active site
15D, 16L, 17A, 18S, 19G, 20Y, 49F, 50G, 77Y, 79D, 80D
CDD
cd01647 (RT_LTR)
putative nucleic a...

50G

putative nucleic acid binding site
50G
CDD
cd01647 (RT_LTR)
active site cd09274

149D

active site
149D, 191E, 216D, 259D
CDD
cd09274 (RNase_HI_RT_Ty3)

191E

active site
149D, 191E, 216D, 259D
CDD
cd09274 (RNase_HI_RT_Ty3)

216D

active site
149D, 191E, 216D, 259D
CDD
cd09274 (RNase_HI_RT_Ty3)

259D

active site
149D, 191E, 216D, 259D
CDD
cd09274 (RNase_HI_RT_Ty3)
RNA/DNA hybrid bin...

149D

RNA/DNA hybrid binding site
149D, 150A, 151S, 152T, 186S, 187A, 188T, 191E, 216D, 249H, 263R
CDD
cd09274 (RNase_HI_RT_Ty3)

150A

RNA/DNA hybrid binding site
149D, 150A, 151S, 152T, 186S, 187A, 188T, 191E, 216D, 249H, 263R
CDD
cd09274 (RNase_HI_RT_Ty3)

151S

RNA/DNA hybrid binding site
149D, 150A, 151S, 152T, 186S, 187A, 188T, 191E, 216D, 249H, 263R
CDD
cd09274 (RNase_HI_RT_Ty3)

152T

RNA/DNA hybrid binding site
149D, 150A, 151S, 152T, 186S, 187A, 188T, 191E, 216D, 249H, 263R
CDD
cd09274 (RNase_HI_RT_Ty3)

186S

RNA/DNA hybrid binding site
149D, 150A, 151S, 152T, 186S, 187A, 188T, 191E, 216D, 249H, 263R
CDD
cd09274 (RNase_HI_RT_Ty3)

187A

RNA/DNA hybrid binding site
149D, 150A, 151S, 152T, 186S, 187A, 188T, 191E, 216D, 249H, 263R
CDD
cd09274 (RNase_HI_RT_Ty3)

188T

RNA/DNA hybrid binding site
149D, 150A, 151S, 152T, 186S, 187A, 188T, 191E, 216D, 249H, 263R
CDD
cd09274 (RNase_HI_RT_Ty3)

191E

RNA/DNA hybrid binding site
149D, 150A, 151S, 152T, 186S, 187A, 188T, 191E, 216D, 249H, 263R
CDD
cd09274 (RNase_HI_RT_Ty3)

216D

RNA/DNA hybrid binding site
149D, 150A, 151S, 152T, 186S, 187A, 188T, 191E, 216D, 249H, 263R
CDD
cd09274 (RNase_HI_RT_Ty3)

249H

RNA/DNA hybrid binding site
149D, 150A, 151S, 152T, 186S, 187A, 188T, 191E, 216D, 249H, 263R
CDD
cd09274 (RNase_HI_RT_Ty3)

263R

RNA/DNA hybrid binding site
149D, 150A, 151S, 152T, 186S, 187A, 188T, 191E, 216D, 249H, 263R
CDD
cd09274 (RNase_HI_RT_Ty3)

GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.

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Entry type

Status

Per-residue features

GBC41221.1

Protein family membership

Domains and repeats

Detailed signature matches

Residue annotation

GO term prediction

Biological Process

Molecular Function

Cellular Component