Filter view on
Entry type
Status
Per-residue features
Colour by
Protein
GBC39316.1
Length
1,533 amino acids
Protein family membership
None predicted.
Domains and repeats
-
Domain329 - 428
- Retrotransposon gag domain (IPR005162)
740 - 839- Aspartic peptidase domain (IPR021109)
1,141 - 1,320- Reverse transcriptase domain (IPR000477)
1
200
400
600
800
1000
1200
1400
1533
Detailed signature matches
no IPR
Unintegrated signatures
Residue annotation
-
Catalytic residue ...756D
-
catalytic motif cd...
-
inhibitor binding ...756D758G760A784M785I786N825I
-
Active site flap c...784M785I786N787V791R792K793R794P
-
putative NTP bindi...1,207Dputative NTP binding site
1,207D, 1,208L, 1,209A, 1,210S, 1,211G, 1,212Y, 1,241F, 1,271D
CDD
cd01647 (RT_LTR)1,208Lputative NTP binding site
1,207D, 1,208L, 1,209A, 1,210S, 1,211G, 1,212Y, 1,241F, 1,271D
CDD
cd01647 (RT_LTR)1,209Aputative NTP binding site
1,207D, 1,208L, 1,209A, 1,210S, 1,211G, 1,212Y, 1,241F, 1,271D
CDD
cd01647 (RT_LTR)1,210Sputative NTP binding site
1,207D, 1,208L, 1,209A, 1,210S, 1,211G, 1,212Y, 1,241F, 1,271D
CDD
cd01647 (RT_LTR)1,211Gputative NTP binding site
1,207D, 1,208L, 1,209A, 1,210S, 1,211G, 1,212Y, 1,241F, 1,271D
CDD
cd01647 (RT_LTR)1,212Yputative NTP binding site
1,207D, 1,208L, 1,209A, 1,210S, 1,211G, 1,212Y, 1,241F, 1,271D
CDD
cd01647 (RT_LTR)1,241Fputative NTP binding site
1,207D, 1,208L, 1,209A, 1,210S, 1,211G, 1,212Y, 1,241F, 1,271D
CDD
cd01647 (RT_LTR)1,271Dputative NTP binding site
1,207D, 1,208L, 1,209A, 1,210S, 1,211G, 1,212Y, 1,241F, 1,271D
CDD
cd01647 (RT_LTR) -
putative active si...1,207Dputative active site
1,207D, 1,208L, 1,209A, 1,210S, 1,211G, 1,212Y, 1,241F, 1,242G, 1,269Y, 1,271D, 1,272D, 1,316L, 1,317G
CDD
cd01647 (RT_LTR)1,208Lputative active site
1,207D, 1,208L, 1,209A, 1,210S, 1,211G, 1,212Y, 1,241F, 1,242G, 1,269Y, 1,271D, 1,272D, 1,316L, 1,317G
CDD
cd01647 (RT_LTR)1,209Aputative active site
1,207D, 1,208L, 1,209A, 1,210S, 1,211G, 1,212Y, 1,241F, 1,242G, 1,269Y, 1,271D, 1,272D, 1,316L, 1,317G
CDD
cd01647 (RT_LTR)1,210Sputative active site
1,207D, 1,208L, 1,209A, 1,210S, 1,211G, 1,212Y, 1,241F, 1,242G, 1,269Y, 1,271D, 1,272D, 1,316L, 1,317G
CDD
cd01647 (RT_LTR)1,211Gputative active site
1,207D, 1,208L, 1,209A, 1,210S, 1,211G, 1,212Y, 1,241F, 1,242G, 1,269Y, 1,271D, 1,272D, 1,316L, 1,317G
CDD
cd01647 (RT_LTR)1,212Yputative active site
1,207D, 1,208L, 1,209A, 1,210S, 1,211G, 1,212Y, 1,241F, 1,242G, 1,269Y, 1,271D, 1,272D, 1,316L, 1,317G
CDD
cd01647 (RT_LTR)1,241Fputative active site
1,207D, 1,208L, 1,209A, 1,210S, 1,211G, 1,212Y, 1,241F, 1,242G, 1,269Y, 1,271D, 1,272D, 1,316L, 1,317G
CDD
cd01647 (RT_LTR)1,242Gputative active site
1,207D, 1,208L, 1,209A, 1,210S, 1,211G, 1,212Y, 1,241F, 1,242G, 1,269Y, 1,271D, 1,272D, 1,316L, 1,317G
CDD
cd01647 (RT_LTR)1,269Yputative active site
1,207D, 1,208L, 1,209A, 1,210S, 1,211G, 1,212Y, 1,241F, 1,242G, 1,269Y, 1,271D, 1,272D, 1,316L, 1,317G
CDD
cd01647 (RT_LTR)1,271Dputative active site
1,207D, 1,208L, 1,209A, 1,210S, 1,211G, 1,212Y, 1,241F, 1,242G, 1,269Y, 1,271D, 1,272D, 1,316L, 1,317G
CDD
cd01647 (RT_LTR)1,272Dputative active site
1,207D, 1,208L, 1,209A, 1,210S, 1,211G, 1,212Y, 1,241F, 1,242G, 1,269Y, 1,271D, 1,272D, 1,316L, 1,317G
CDD
cd01647 (RT_LTR)1,316Lputative active site
1,207D, 1,208L, 1,209A, 1,210S, 1,211G, 1,212Y, 1,241F, 1,242G, 1,269Y, 1,271D, 1,272D, 1,316L, 1,317G
CDD
cd01647 (RT_LTR)1,317Gputative active site
1,207D, 1,208L, 1,209A, 1,210S, 1,211G, 1,212Y, 1,241F, 1,242G, 1,269Y, 1,271D, 1,272D, 1,316L, 1,317G
CDD
cd01647 (RT_LTR) -
putative nucleic a...1,242G
-
active site cd092741,418D1,460E1,485D1,528D
-
RNA/DNA hybrid bin...1,418DRNA/DNA hybrid binding site
1,418D, 1,419A, 1,420S, 1,421T, 1,455T, 1,456A, 1,457T, 1,460E, 1,485D, 1,518H, 1,532R
CDD
cd09274 (RNase_HI_RT_Ty3)1,419ARNA/DNA hybrid binding site
1,418D, 1,419A, 1,420S, 1,421T, 1,455T, 1,456A, 1,457T, 1,460E, 1,485D, 1,518H, 1,532R
CDD
cd09274 (RNase_HI_RT_Ty3)1,420SRNA/DNA hybrid binding site
1,418D, 1,419A, 1,420S, 1,421T, 1,455T, 1,456A, 1,457T, 1,460E, 1,485D, 1,518H, 1,532R
CDD
cd09274 (RNase_HI_RT_Ty3)1,421TRNA/DNA hybrid binding site
1,418D, 1,419A, 1,420S, 1,421T, 1,455T, 1,456A, 1,457T, 1,460E, 1,485D, 1,518H, 1,532R
CDD
cd09274 (RNase_HI_RT_Ty3)1,455TRNA/DNA hybrid binding site
1,418D, 1,419A, 1,420S, 1,421T, 1,455T, 1,456A, 1,457T, 1,460E, 1,485D, 1,518H, 1,532R
CDD
cd09274 (RNase_HI_RT_Ty3)1,456ARNA/DNA hybrid binding site
1,418D, 1,419A, 1,420S, 1,421T, 1,455T, 1,456A, 1,457T, 1,460E, 1,485D, 1,518H, 1,532R
CDD
cd09274 (RNase_HI_RT_Ty3)1,457TRNA/DNA hybrid binding site
1,418D, 1,419A, 1,420S, 1,421T, 1,455T, 1,456A, 1,457T, 1,460E, 1,485D, 1,518H, 1,532R
CDD
cd09274 (RNase_HI_RT_Ty3)1,460ERNA/DNA hybrid binding site
1,418D, 1,419A, 1,420S, 1,421T, 1,455T, 1,456A, 1,457T, 1,460E, 1,485D, 1,518H, 1,532R
CDD
cd09274 (RNase_HI_RT_Ty3)1,485DRNA/DNA hybrid binding site
1,418D, 1,419A, 1,420S, 1,421T, 1,455T, 1,456A, 1,457T, 1,460E, 1,485D, 1,518H, 1,532R
CDD
cd09274 (RNase_HI_RT_Ty3)1,518HRNA/DNA hybrid binding site
1,418D, 1,419A, 1,420S, 1,421T, 1,455T, 1,456A, 1,457T, 1,460E, 1,485D, 1,518H, 1,532R
CDD
cd09274 (RNase_HI_RT_Ty3)1,532RRNA/DNA hybrid binding site
1,418D, 1,419A, 1,420S, 1,421T, 1,455T, 1,456A, 1,457T, 1,460E, 1,485D, 1,518H, 1,532R
CDD
cd09274 (RNase_HI_RT_Ty3)
GO term prediction
Biological Process
None predicted.
Molecular Function
None predicted.
Cellular Component
None predicted.