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Entry type
Status
Per-residue features
Colour by
Protein
GBC35043.1
Length
80 amino acids
Protein family membership
- Sm-like protein Lsm6/SmF (IPR016487)
Domains and repeats
-
Domain8 - 76
- LSM domain (IPR010920)
- LSM domain, eukaryotic/archaea-type (IPR001163)
- LSM domain (IPR010920)
1
10
20
30
40
50
60
70
80
80
Detailed signature matches
-
-
PIRSF006609 (snRNP_SmF)1 - 80
-
no IPR
Residue annotation
-
hexamer interface ...13Lhexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)16Vhexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)17Ihexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)22Lhexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)24Khexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)25Lhexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)26Nhexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)29Vhexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)31Yhexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)36Shexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)37Chexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)38Lhexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)39Dhexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)42Mhexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)43Nhexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)45Ahexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)63Dhexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)64Ahexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)65Fhexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)66Ihexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)67Rhexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)68Ghexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)69Nhexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)70Nhexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)71Vhexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)72Lhexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)73Yhexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)74Ihexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6)75Shexamer interface
13L, 16V, 17I, 22L, 24K, 25L, 26N, 29V, 31Y, 36S, 37C, 38L, 39D, 42M, 43N, 45A, 63D, 64A, 65F, 66I, 67R, 68G, 69N, 70N, 71V, 72L, 73Y, 74I, 75S
CDD
cd01726 (LSm6) -
Sm1 motif cd0172621VSm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6)22LSm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6)23VSm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6)24KSm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6)25LSm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6)26NSm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6)27SSm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6)29VSm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6)30DSm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6)31YSm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6)32RSm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6)33GSm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6)34ISm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6)35LSm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6)36SSm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6)37CSm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6)38LSm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6)39DSm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6)40GSm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6)41YSm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6)43NSm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6)44ISm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6)45ASm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6)46LSm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6)47ESm1 motif
21V, 22L, 23V, 24K, 25L, 26N, 27S, 29V, 30D, 31Y, 32R, 33G, 34I, 35L, 36S, 37C, 38L, 39D, 40G, 41Y, 43N, 44I, 45A, 46L, 47E
CDD
cd01726 (LSm6) -
putative RNA bindi...
-
Sm2 motif cd0172663D64A65F66I67R68G69N70N71V72L73Y74I
GO term prediction
Biological Process
GO:0000398 mRNA splicing, via spliceosome
Molecular Function
None predicted.
Cellular Component
GO:0005732 small nucleolar ribonucleoprotein complex