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Entry type
Status
Per-residue features
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Protein
GBC28097.1
Length
1,654 amino acids
Protein family membership
None predicted.
Domains and repeats
-
Domain189 - 294
- Retrotransposon gag domain (IPR005162)
385 - 418- Zinc finger, CCHC-type (IPR001878)
618 - 724- Aspartic peptidase domain (IPR021109)
- Retroviral aspartyl protease (IPR013242)
834 - 1,052- Reverse transcriptase domain (IPR000477)
1,360 - 1,519- Ribonuclease H-like domain (IPR012337)
- Integrase, catalytic core (IPR001584)
1
200
400
600
800
1000
1200
1400
1654
Detailed signature matches
no IPR
Unintegrated signatures
-
752 - 772
-
SSF56672 (DNA/RNA p...)843 - 1,249
-
cd00303 (retropepsi...)623 - 710
-
cd01647 (RT_LTR)902 - 1,052
-
cd09274 (RNase_HI_R...)1,147 - 1,256
-
mobidb-lite (disord...)412 - 445477 - 519570 - 599364 - 391751 - 779
Residue annotation
-
Catalytic residue ...634D
-
catalytic motif cd...
-
inhibitor binding ...634D636G638A662M663V664N703I
-
Active site flap c...662M663V664N665V669R670R671R672P
-
putative NTP bindi...939D940L941A942S943G944F973F1,003D
-
putative active si...939Dputative active site
939D, 940L, 941A, 942S, 943G, 944F, 973F, 974S, 1,001Y, 1,003D, 1,004D, 1,048L, 1,049G
CDD
cd01647 (RT_LTR)940Lputative active site
939D, 940L, 941A, 942S, 943G, 944F, 973F, 974S, 1,001Y, 1,003D, 1,004D, 1,048L, 1,049G
CDD
cd01647 (RT_LTR)941Aputative active site
939D, 940L, 941A, 942S, 943G, 944F, 973F, 974S, 1,001Y, 1,003D, 1,004D, 1,048L, 1,049G
CDD
cd01647 (RT_LTR)942Sputative active site
939D, 940L, 941A, 942S, 943G, 944F, 973F, 974S, 1,001Y, 1,003D, 1,004D, 1,048L, 1,049G
CDD
cd01647 (RT_LTR)943Gputative active site
939D, 940L, 941A, 942S, 943G, 944F, 973F, 974S, 1,001Y, 1,003D, 1,004D, 1,048L, 1,049G
CDD
cd01647 (RT_LTR)944Fputative active site
939D, 940L, 941A, 942S, 943G, 944F, 973F, 974S, 1,001Y, 1,003D, 1,004D, 1,048L, 1,049G
CDD
cd01647 (RT_LTR)973Fputative active site
939D, 940L, 941A, 942S, 943G, 944F, 973F, 974S, 1,001Y, 1,003D, 1,004D, 1,048L, 1,049G
CDD
cd01647 (RT_LTR)974Sputative active site
939D, 940L, 941A, 942S, 943G, 944F, 973F, 974S, 1,001Y, 1,003D, 1,004D, 1,048L, 1,049G
CDD
cd01647 (RT_LTR)1,001Yputative active site
939D, 940L, 941A, 942S, 943G, 944F, 973F, 974S, 1,001Y, 1,003D, 1,004D, 1,048L, 1,049G
CDD
cd01647 (RT_LTR)1,003Dputative active site
939D, 940L, 941A, 942S, 943G, 944F, 973F, 974S, 1,001Y, 1,003D, 1,004D, 1,048L, 1,049G
CDD
cd01647 (RT_LTR)1,004Dputative active site
939D, 940L, 941A, 942S, 943G, 944F, 973F, 974S, 1,001Y, 1,003D, 1,004D, 1,048L, 1,049G
CDD
cd01647 (RT_LTR)1,048Lputative active site
939D, 940L, 941A, 942S, 943G, 944F, 973F, 974S, 1,001Y, 1,003D, 1,004D, 1,048L, 1,049G
CDD
cd01647 (RT_LTR)1,049Gputative active site
939D, 940L, 941A, 942S, 943G, 944F, 973F, 974S, 1,001Y, 1,003D, 1,004D, 1,048L, 1,049G
CDD
cd01647 (RT_LTR) -
putative nucleic a...974S
-
RNA/DNA hybrid bin...1,150DRNA/DNA hybrid binding site
1,150D, 1,151A, 1,152S, 1,153T, 1,187G, 1,188I, 1,189T, 1,192E, 1,217D, 1,250N
CDD
cd09274 (RNase_HI_RT_Ty3)1,151ARNA/DNA hybrid binding site
1,150D, 1,151A, 1,152S, 1,153T, 1,187G, 1,188I, 1,189T, 1,192E, 1,217D, 1,250N
CDD
cd09274 (RNase_HI_RT_Ty3)1,152SRNA/DNA hybrid binding site
1,150D, 1,151A, 1,152S, 1,153T, 1,187G, 1,188I, 1,189T, 1,192E, 1,217D, 1,250N
CDD
cd09274 (RNase_HI_RT_Ty3)1,153TRNA/DNA hybrid binding site
1,150D, 1,151A, 1,152S, 1,153T, 1,187G, 1,188I, 1,189T, 1,192E, 1,217D, 1,250N
CDD
cd09274 (RNase_HI_RT_Ty3)1,187GRNA/DNA hybrid binding site
1,150D, 1,151A, 1,152S, 1,153T, 1,187G, 1,188I, 1,189T, 1,192E, 1,217D, 1,250N
CDD
cd09274 (RNase_HI_RT_Ty3)1,188IRNA/DNA hybrid binding site
1,150D, 1,151A, 1,152S, 1,153T, 1,187G, 1,188I, 1,189T, 1,192E, 1,217D, 1,250N
CDD
cd09274 (RNase_HI_RT_Ty3)1,189TRNA/DNA hybrid binding site
1,150D, 1,151A, 1,152S, 1,153T, 1,187G, 1,188I, 1,189T, 1,192E, 1,217D, 1,250N
CDD
cd09274 (RNase_HI_RT_Ty3)1,192ERNA/DNA hybrid binding site
1,150D, 1,151A, 1,152S, 1,153T, 1,187G, 1,188I, 1,189T, 1,192E, 1,217D, 1,250N
CDD
cd09274 (RNase_HI_RT_Ty3)1,217DRNA/DNA hybrid binding site
1,150D, 1,151A, 1,152S, 1,153T, 1,187G, 1,188I, 1,189T, 1,192E, 1,217D, 1,250N
CDD
cd09274 (RNase_HI_RT_Ty3)1,250NRNA/DNA hybrid binding site
1,150D, 1,151A, 1,152S, 1,153T, 1,187G, 1,188I, 1,189T, 1,192E, 1,217D, 1,250N
CDD
cd09274 (RNase_HI_RT_Ty3)
GO term prediction
Biological Process
GO:0015074 DNA integration
Molecular Function
GO:0003676 nucleic acid binding
GO:0008270 zinc ion binding
Cellular Component
None predicted.