Protein

GBC28097.1

Length
1,654 amino acids

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 200 400 600 800 1000 1200 1400 1654

Detailed signature matches

  1. Domain IPR005162
    Retrotransposon gag domain
    1. PF03732 (Retrotrans...)
  2. Domain IPR001878
    Zinc finger, CCHC-type
    1. PS50158 (ZF_CCHC)
    2. PF00098 (zf-CCHC)
    3. SM00343 (c2hcfinal6)
    4. SSF57756 (Retroviru...)
  3. Domain IPR021109
    Aspartic peptidase domain
    1. SSF50630 (Acid prot...)
  4. Domain IPR013242
    Retroviral aspartyl protease
    1. PF08284 (RVP_2)
  5. Domain IPR000477
    Reverse transcriptase domain
    1. PF00078 (RVT_1)
    2. PS50878 (RT_POL)
  6. Domain IPR012337
    Ribonuclease H-like domain
    1. SSF53098 (Ribonucle...)
  7. Domain IPR001584
    Integrase, catalytic core
    1. PS50994 (INTEGRASE)
    2. PF00665 (rve)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. SSF56672 (DNA/RNA p...)
  3. cd00303 (retropepsi...)
  4. cd01647 (RT_LTR)
  5. cd09274 (RNase_HI_R...)
  6. mobidb-lite (disord...)

Residue annotation

  1. Catalytic residue ...
  2. catalytic motif cd...
  3. inhibitor binding ...
  4. Active site flap c...
  5. putative NTP bindi...
  6. putative active si...
  7. putative nucleic a...
  8. RNA/DNA hybrid bin...

GO term prediction

Biological Process

GO:0015074 DNA integration

Molecular Function

GO:0003676 nucleic acid binding
GO:0008270 zinc ion binding

Cellular Component

None predicted.