GBC21878.1

Protein

Length

1,776 amino acids

Protein family membership

None predicted.

Domains and repeats

Domain
736 - 838
Retrotransposon gag domain (IPR005162)
923 - 963
Zinc finger, CCHC-type (IPR001878)
1,109 - 1,136
Zinc finger, CCHC-type (IPR001878)
1,383 - 1,562
Reverse transcriptase domain (IPR000477)

1 200 400 600 800 1000 1200 1400 1600 1776

Detailed signature matches

IPR005162

Retrotransposon gag domain
1. PF03732 (Retrotrans...)
  
  736 - 838
  
  Pfam
  PF03732 (Retrotrans_gag)
IPR001878

Zinc finger, CCHC-type
1. PS50158 (ZF_CCHC)
  
  1,121 - 1,136
  
  PROSITE profiles
  PS50158 (ZF_CCHC)
  
  944 - 958
  
  PROSITE profiles
  PS50158 (ZF_CCHC)
2. PF00098 (zf-CCHC)
  
  942 - 958
  
  Pfam
  PF00098 (zf-CCHC)
3. SM00343 (c2hcfinal6)
  
  1,120 - 1,136
  
  SMART
  SM00343 (c2hcfinal6)
  
  943 - 959
  
  SMART
  SM00343 (c2hcfinal6)
4. SSF57756 (Retroviru...)
  
  923 - 963
  
  SUPERFAMILY
  SSF57756 (Retrovirus zinc finger-like domains)
  
  1,109 - 1,136
  
  SUPERFAMILY
  SSF57756 (Retrovirus zinc finger-like domains)
IPR000477

Reverse transcriptase domain
1. PF00078 (RVT_1)
  
  1,404 - 1,561
  
  Pfam
  PF00078 (RVT_1)
2. PS50878 (RT_POL)
  
  1,383 - 1,562
  
  PROSITE profiles
  PS50878 (RT_POL)

no IPR

Unintegrated signatures

Coil

515 - 535

COILS
Coil (Coil)
SSF56672 (DNA/RNA p...)

1,327 - 1,761

SUPERFAMILY
SSF56672 (DNA/RNA polymerases)
cd01647 (RT_LTR)

1,386 - 1,562

CDD
cd01647 (RT_LTR)
cd09274 (RNase_HI_R...)

1,656 - 1,775

CDD
cd09274 (RNase_HI_RT_Ty3)
mobidb-lite (disord...)

1,056 - 1,123

MobiDB Lite
mobidb-lite (disorder_prediction)

958 - 1,001

MobiDB Lite
mobidb-lite (disorder_prediction)

923 - 944

MobiDB Lite
mobidb-lite (disorder_prediction)

541 - 616

MobiDB Lite
mobidb-lite (disorder_prediction)

Residue annotation

putative NTP bindi...

1,449D

putative NTP binding site
1,449D, 1,450L, 1,451A, 1,452S, 1,453G, 1,454F, 1,483F, 1,513D
CDD
cd01647 (RT_LTR)

1,450L

putative NTP binding site
1,449D, 1,450L, 1,451A, 1,452S, 1,453G, 1,454F, 1,483F, 1,513D
CDD
cd01647 (RT_LTR)

1,451A

putative NTP binding site
1,449D, 1,450L, 1,451A, 1,452S, 1,453G, 1,454F, 1,483F, 1,513D
CDD
cd01647 (RT_LTR)

1,452S

putative NTP binding site
1,449D, 1,450L, 1,451A, 1,452S, 1,453G, 1,454F, 1,483F, 1,513D
CDD
cd01647 (RT_LTR)

1,453G

putative NTP binding site
1,449D, 1,450L, 1,451A, 1,452S, 1,453G, 1,454F, 1,483F, 1,513D
CDD
cd01647 (RT_LTR)

1,454F

putative NTP binding site
1,449D, 1,450L, 1,451A, 1,452S, 1,453G, 1,454F, 1,483F, 1,513D
CDD
cd01647 (RT_LTR)

1,483F

putative NTP binding site
1,449D, 1,450L, 1,451A, 1,452S, 1,453G, 1,454F, 1,483F, 1,513D
CDD
cd01647 (RT_LTR)

1,513D

putative NTP binding site
1,449D, 1,450L, 1,451A, 1,452S, 1,453G, 1,454F, 1,483F, 1,513D
CDD
cd01647 (RT_LTR)
putative active si...

1,449D

putative active site
1,449D, 1,450L, 1,451A, 1,452S, 1,453G, 1,454F, 1,483F, 1,484G, 1,511Y, 1,513D, 1,514D, 1,558L, 1,559G
CDD
cd01647 (RT_LTR)

1,450L

putative active site
1,449D, 1,450L, 1,451A, 1,452S, 1,453G, 1,454F, 1,483F, 1,484G, 1,511Y, 1,513D, 1,514D, 1,558L, 1,559G
CDD
cd01647 (RT_LTR)

1,451A

putative active site
1,449D, 1,450L, 1,451A, 1,452S, 1,453G, 1,454F, 1,483F, 1,484G, 1,511Y, 1,513D, 1,514D, 1,558L, 1,559G
CDD
cd01647 (RT_LTR)

1,452S

putative active site
1,449D, 1,450L, 1,451A, 1,452S, 1,453G, 1,454F, 1,483F, 1,484G, 1,511Y, 1,513D, 1,514D, 1,558L, 1,559G
CDD
cd01647 (RT_LTR)

1,453G

putative active site
1,449D, 1,450L, 1,451A, 1,452S, 1,453G, 1,454F, 1,483F, 1,484G, 1,511Y, 1,513D, 1,514D, 1,558L, 1,559G
CDD
cd01647 (RT_LTR)

1,454F

putative active site
1,449D, 1,450L, 1,451A, 1,452S, 1,453G, 1,454F, 1,483F, 1,484G, 1,511Y, 1,513D, 1,514D, 1,558L, 1,559G
CDD
cd01647 (RT_LTR)

1,483F

putative active site
1,449D, 1,450L, 1,451A, 1,452S, 1,453G, 1,454F, 1,483F, 1,484G, 1,511Y, 1,513D, 1,514D, 1,558L, 1,559G
CDD
cd01647 (RT_LTR)

1,484G

putative active site
1,449D, 1,450L, 1,451A, 1,452S, 1,453G, 1,454F, 1,483F, 1,484G, 1,511Y, 1,513D, 1,514D, 1,558L, 1,559G
CDD
cd01647 (RT_LTR)

1,511Y

putative active site
1,449D, 1,450L, 1,451A, 1,452S, 1,453G, 1,454F, 1,483F, 1,484G, 1,511Y, 1,513D, 1,514D, 1,558L, 1,559G
CDD
cd01647 (RT_LTR)

1,513D

putative active site
1,449D, 1,450L, 1,451A, 1,452S, 1,453G, 1,454F, 1,483F, 1,484G, 1,511Y, 1,513D, 1,514D, 1,558L, 1,559G
CDD
cd01647 (RT_LTR)

1,514D

putative active site
1,449D, 1,450L, 1,451A, 1,452S, 1,453G, 1,454F, 1,483F, 1,484G, 1,511Y, 1,513D, 1,514D, 1,558L, 1,559G
CDD
cd01647 (RT_LTR)

1,558L

putative active site
1,449D, 1,450L, 1,451A, 1,452S, 1,453G, 1,454F, 1,483F, 1,484G, 1,511Y, 1,513D, 1,514D, 1,558L, 1,559G
CDD
cd01647 (RT_LTR)

1,559G

putative active site
1,449D, 1,450L, 1,451A, 1,452S, 1,453G, 1,454F, 1,483F, 1,484G, 1,511Y, 1,513D, 1,514D, 1,558L, 1,559G
CDD
cd01647 (RT_LTR)
putative nucleic a...

1,484G

putative nucleic acid binding site
1,484G
CDD
cd01647 (RT_LTR)
active site cd09274

1,660D

active site
1,660D, 1,702E, 1,727D, 1,770D
CDD
cd09274 (RNase_HI_RT_Ty3)

1,702E

active site
1,660D, 1,702E, 1,727D, 1,770D
CDD
cd09274 (RNase_HI_RT_Ty3)

1,727D

active site
1,660D, 1,702E, 1,727D, 1,770D
CDD
cd09274 (RNase_HI_RT_Ty3)

1,770D

active site
1,660D, 1,702E, 1,727D, 1,770D
CDD
cd09274 (RNase_HI_RT_Ty3)
RNA/DNA hybrid bin...

1,660D

RNA/DNA hybrid binding site
1,660D, 1,661A, 1,662S, 1,663G, 1,697P, 1,698I, 1,699T, 1,702E, 1,727D, 1,760H, 1,774R
CDD
cd09274 (RNase_HI_RT_Ty3)

1,661A

RNA/DNA hybrid binding site
1,660D, 1,661A, 1,662S, 1,663G, 1,697P, 1,698I, 1,699T, 1,702E, 1,727D, 1,760H, 1,774R
CDD
cd09274 (RNase_HI_RT_Ty3)

1,662S

RNA/DNA hybrid binding site
1,660D, 1,661A, 1,662S, 1,663G, 1,697P, 1,698I, 1,699T, 1,702E, 1,727D, 1,760H, 1,774R
CDD
cd09274 (RNase_HI_RT_Ty3)

1,663G

RNA/DNA hybrid binding site
1,660D, 1,661A, 1,662S, 1,663G, 1,697P, 1,698I, 1,699T, 1,702E, 1,727D, 1,760H, 1,774R
CDD
cd09274 (RNase_HI_RT_Ty3)

1,697P

RNA/DNA hybrid binding site
1,660D, 1,661A, 1,662S, 1,663G, 1,697P, 1,698I, 1,699T, 1,702E, 1,727D, 1,760H, 1,774R
CDD
cd09274 (RNase_HI_RT_Ty3)

1,698I

RNA/DNA hybrid binding site
1,660D, 1,661A, 1,662S, 1,663G, 1,697P, 1,698I, 1,699T, 1,702E, 1,727D, 1,760H, 1,774R
CDD
cd09274 (RNase_HI_RT_Ty3)

1,699T

RNA/DNA hybrid binding site
1,660D, 1,661A, 1,662S, 1,663G, 1,697P, 1,698I, 1,699T, 1,702E, 1,727D, 1,760H, 1,774R
CDD
cd09274 (RNase_HI_RT_Ty3)

1,702E

RNA/DNA hybrid binding site
1,660D, 1,661A, 1,662S, 1,663G, 1,697P, 1,698I, 1,699T, 1,702E, 1,727D, 1,760H, 1,774R
CDD
cd09274 (RNase_HI_RT_Ty3)

1,727D

RNA/DNA hybrid binding site
1,660D, 1,661A, 1,662S, 1,663G, 1,697P, 1,698I, 1,699T, 1,702E, 1,727D, 1,760H, 1,774R
CDD
cd09274 (RNase_HI_RT_Ty3)

1,760H

RNA/DNA hybrid binding site
1,660D, 1,661A, 1,662S, 1,663G, 1,697P, 1,698I, 1,699T, 1,702E, 1,727D, 1,760H, 1,774R
CDD
cd09274 (RNase_HI_RT_Ty3)

1,774R

RNA/DNA hybrid binding site
1,660D, 1,661A, 1,662S, 1,663G, 1,697P, 1,698I, 1,699T, 1,702E, 1,727D, 1,760H, 1,774R
CDD
cd09274 (RNase_HI_RT_Ty3)

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0003676 nucleic acid binding
GO:0008270 zinc ion binding

Cellular Component

None predicted.

Filter view on

Entry type

Status

Per-residue features

GBC21878.1

Protein family membership

Domains and repeats

Detailed signature matches

Residue annotation

GO term prediction

Biological Process

Molecular Function

Cellular Component