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Entry type
Status
Per-residue features
Colour by
Protein
GBC19702.1
Length
116 amino acids
Protein family membership
None predicted.
Domains and repeats
-
Domain2 - 114
- LSM domain (IPR010920)
- LSM domain, eukaryotic/archaea-type (IPR001163)
- Small nuclear ribonucleoprotein D1 (IPR034102)
- LSM domain, eukaryotic/archaea-type (IPR001163)
- LSM domain (IPR010920)
1
20
40
60
80
100
116
Detailed signature matches
no IPR
Unintegrated signatures
-
mobidb-lite (disord...)83 - 116
Residue annotation
-
RNA binding site c...2K4V35S36M37N61R62G63N
-
heptamer interface...3Lheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)6Fheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)7Lheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)18Eheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)19Lheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)20Kheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)21Nheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)30Theptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)31Gheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)33Dheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)34Mheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)35Sheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)36Mheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)39Hheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)55Lheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)57Sheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)58Lheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)59Sheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)60Iheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)61Rheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)62Gheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)63Nheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)64Nheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)65Vheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)66Rheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)67Yheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)68Yheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)69Iheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)70Lheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)71Pheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)74Lheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1)79Lheptamer interface
3L, 6F, 7L, 18E, 19L, 20K, 21N, 30T, 31G, 33D, 34M, 35S, 36M, 39H, 55L, 57S, 58L, 59S, 60I, 61R, 62G, 63N, 64N, 65V, 66R, 67Y, 68Y, 69I, 70L, 71P, 74L, 79L
CDD
cd01724 (Sm_D1) -
Sm1 motif cd0172415VSm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1)16TSm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1)17ISm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1)18ESm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1)19LSm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1)20KSm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1)21NSm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1)23TSm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1)24ISm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1)25VSm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1)26HSm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1)27GSm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1)28TSm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1)29ISm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1)30TSm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1)31GSm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1)32VSm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1)33DSm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1)34MSm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1)35SSm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1)37NSm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1)38TSm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1)39HSm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1)40LSm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1)41KSm1 motif
15V, 16T, 17I, 18E, 19L, 20K, 21N, 23T, 24I, 25V, 26H, 27G, 28T, 29I, 30T, 31G, 32V, 33D, 34M, 35S, 37N, 38T, 39H, 40L, 41K
CDD
cd01724 (Sm_D1) -
Sm2 motif cd0172457S58L59S60I61R62G63N64N65V66R67Y68Y
GO term prediction
Biological Process
GO:0000387 spliceosomal snRNP assembly
Molecular Function
None predicted.
Cellular Component
None predicted.