GBC12823.1 - InterPro

Protein

GBC12823.1

Length

1,590 amino acids

Protein family membership

Transcription factor TFIIB (IPR000812)

Domains and repeats

Domain
1,222 - 1,299
Cyclin-like (IPR013763)
Transcription factor TFIIB, cyclin-like domain (IPR013150)
1,312 - 1,425
Cyclin-like (IPR013763)
Transcription factor TFIIB, cyclin-like domain (IPR013150)

1 200 400 600 800 1000 1200 1400 1590

Detailed signature matches

IPR000812

Transcription factor TFIIB
1. PR00685 (TIFACTORIIB)
  
  1,351 - 1,367
  
  PRINTS
  PR00685 (TIFACTORIIB)
  
  1,284 - 1,299
  
  PRINTS
  PR00685 (TIFACTORIIB)
  
  1,258 - 1,277
  
  PRINTS
  PR00685 (TIFACTORIIB)
  
  1,317 - 1,335
  
  PRINTS
  PR00685 (TIFACTORIIB)
IPR013763

Cyclin-like
1. SSF47954 (Cyclin-like)
  
  1,222 - 1,299
  
  SUPERFAMILY
  SSF47954 (Cyclin-like)
  
  1,312 - 1,425
  
  SUPERFAMILY
  SSF47954 (Cyclin-like)
IPR013150

Transcription factor TFIIB, cyclin-like domain
1. PF00382 (TFIIB)
  
  1,319 - 1,374
  
  Pfam
  PF00382 (TFIIB)
  
  1,235 - 1,288
  
  Pfam
  PF00382 (TFIIB)

Unintegrated signatures

no IPR

Unintegrated signatures

Coil

125 - 150

COILS
Coil (Coil)

547 - 570

COILS
Coil (Coil)
cd00043 (CYCLIN)

1,317 - 1,389

CDD
cd00043 (CYCLIN)
mobidb-lite (disord...)

619 - 771

MobiDB Lite
mobidb-lite (disorder_prediction)

1,120 - 1,148

MobiDB Lite
mobidb-lite (disorder_prediction)

1,469 - 1,526

MobiDB Lite
mobidb-lite (disorder_prediction)

996 - 1,090

MobiDB Lite
mobidb-lite (disorder_prediction)

56 - 369

MobiDB Lite
mobidb-lite (disorder_prediction)

484 - 557

MobiDB Lite
mobidb-lite (disorder_prediction)

1,177 - 1,206

MobiDB Lite
mobidb-lite (disorder_prediction)

790 - 827

MobiDB Lite
mobidb-lite (disorder_prediction)

1,544 - 1,590

MobiDB Lite
mobidb-lite (disorder_prediction)

Residue annotation

binding site 1 cd0...

1,317Y

binding site 1
1,317Y, 1,318L, 1,320R, 1,321W, 1,343S, 1,353P, 1,354V
CDD
cd00043 (CYCLIN)

1,318L

binding site 1
1,317Y, 1,318L, 1,320R, 1,321W, 1,343S, 1,353P, 1,354V
CDD
cd00043 (CYCLIN)

1,320R

binding site 1
1,317Y, 1,318L, 1,320R, 1,321W, 1,343S, 1,353P, 1,354V
CDD
cd00043 (CYCLIN)

1,321W

binding site 1
1,317Y, 1,318L, 1,320R, 1,321W, 1,343S, 1,353P, 1,354V
CDD
cd00043 (CYCLIN)

1,343S

binding site 1
1,317Y, 1,318L, 1,320R, 1,321W, 1,343S, 1,353P, 1,354V
CDD
cd00043 (CYCLIN)

1,353P

binding site 1
1,317Y, 1,318L, 1,320R, 1,321W, 1,343S, 1,353P, 1,354V
CDD
cd00043 (CYCLIN)

1,354V

binding site 1
1,317Y, 1,318L, 1,320R, 1,321W, 1,343S, 1,353P, 1,354V
CDD
cd00043 (CYCLIN)
binding site 2 cd0...

1,362W

binding site 2
1,362W, 1,366H, 1,373T, 1,388I
CDD
cd00043 (CYCLIN)

1,366H

binding site 2
1,362W, 1,366H, 1,373T, 1,388I
CDD
cd00043 (CYCLIN)

1,373T

binding site 2
1,362W, 1,366H, 1,373T, 1,388I
CDD
cd00043 (CYCLIN)

1,388I

binding site 2
1,362W, 1,366H, 1,373T, 1,388I
CDD
cd00043 (CYCLIN)

GO term prediction

Biological Process

GO:0006355 regulation of transcription, DNA-templated
GO:0070897 DNA-templated transcriptional preinitiation complex assembly

Molecular Function

GO:0017025 TBP-class protein binding

Cellular Component

None predicted.