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Entry type
Status
Per-residue features
Colour by
Protein
GBC50782.1
Length
243 amino acids
Protein family membership
None predicted.
Domains and repeats
-
Domain9 - 178
- Ribosomal protein S5 domain 2-type fold (IPR020568)
- Exoribonuclease, phosphorolytic domain 1 (IPR001247)
- Ribosomal protein S5 domain 2-type fold (IPR020568)
-
Domain151 - 237
- Exoribonuclease, phosphorolytic domain 2 (IPR015847)
1
50
100
150
200
243
Detailed signature matches
Residue annotation
-
hexamer interface ...34Qhexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)36Dhexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)51Ahexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)53Yhexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)54Ghexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)55Phexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)72Nhexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)74Ehexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)79Phexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)97Ehexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)100Shexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)104Qhexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)118Shexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)123Yhexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)128Qhexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)146Ihexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)147Dhexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)148Ahexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)155Yhexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)194Ihexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)195Thexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)196Lhexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)197Lhexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)198Qhexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)199Mhexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)200Ehexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)201Shexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)202Rhexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)203Lhexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)204Hhexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)205Ihexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)208Fhexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41)212Mhexamer interface
34Q, 36D, 51A, 53Y, 54G, 55P, 72N, 74E, 79P, 97E, 100S, 104Q, 118S, 123Y, 128Q, 146I, 147D, 148A, 155Y, 194I, 195T, 196L, 197L, 198Q, 199M, 200E, 201S, 202R, 203L, 204H, 205I, 208F, 212M
CDD
cd11370 (RNase_PH_RRP41) -
Rrp4 interface cd1...36DRrp4 interface
36D, 54G, 55P, 56R, 57E, 59R, 111M, 115Y, 118S, 146I, 147D, 148A, 149G, 151P, 152M, 153K, 155Y, 227D, 230V, 231R, 234I, 235K
CDD
cd11370 (RNase_PH_RRP41)54GRrp4 interface
36D, 54G, 55P, 56R, 57E, 59R, 111M, 115Y, 118S, 146I, 147D, 148A, 149G, 151P, 152M, 153K, 155Y, 227D, 230V, 231R, 234I, 235K
CDD
cd11370 (RNase_PH_RRP41)55PRrp4 interface
36D, 54G, 55P, 56R, 57E, 59R, 111M, 115Y, 118S, 146I, 147D, 148A, 149G, 151P, 152M, 153K, 155Y, 227D, 230V, 231R, 234I, 235K
CDD
cd11370 (RNase_PH_RRP41)56RRrp4 interface
36D, 54G, 55P, 56R, 57E, 59R, 111M, 115Y, 118S, 146I, 147D, 148A, 149G, 151P, 152M, 153K, 155Y, 227D, 230V, 231R, 234I, 235K
CDD
cd11370 (RNase_PH_RRP41)57ERrp4 interface
36D, 54G, 55P, 56R, 57E, 59R, 111M, 115Y, 118S, 146I, 147D, 148A, 149G, 151P, 152M, 153K, 155Y, 227D, 230V, 231R, 234I, 235K
CDD
cd11370 (RNase_PH_RRP41)59RRrp4 interface
36D, 54G, 55P, 56R, 57E, 59R, 111M, 115Y, 118S, 146I, 147D, 148A, 149G, 151P, 152M, 153K, 155Y, 227D, 230V, 231R, 234I, 235K
CDD
cd11370 (RNase_PH_RRP41)111MRrp4 interface
36D, 54G, 55P, 56R, 57E, 59R, 111M, 115Y, 118S, 146I, 147D, 148A, 149G, 151P, 152M, 153K, 155Y, 227D, 230V, 231R, 234I, 235K
CDD
cd11370 (RNase_PH_RRP41)115YRrp4 interface
36D, 54G, 55P, 56R, 57E, 59R, 111M, 115Y, 118S, 146I, 147D, 148A, 149G, 151P, 152M, 153K, 155Y, 227D, 230V, 231R, 234I, 235K
CDD
cd11370 (RNase_PH_RRP41)118SRrp4 interface
36D, 54G, 55P, 56R, 57E, 59R, 111M, 115Y, 118S, 146I, 147D, 148A, 149G, 151P, 152M, 153K, 155Y, 227D, 230V, 231R, 234I, 235K
CDD
cd11370 (RNase_PH_RRP41)146IRrp4 interface
36D, 54G, 55P, 56R, 57E, 59R, 111M, 115Y, 118S, 146I, 147D, 148A, 149G, 151P, 152M, 153K, 155Y, 227D, 230V, 231R, 234I, 235K
CDD
cd11370 (RNase_PH_RRP41)147DRrp4 interface
36D, 54G, 55P, 56R, 57E, 59R, 111M, 115Y, 118S, 146I, 147D, 148A, 149G, 151P, 152M, 153K, 155Y, 227D, 230V, 231R, 234I, 235K
CDD
cd11370 (RNase_PH_RRP41)148ARrp4 interface
36D, 54G, 55P, 56R, 57E, 59R, 111M, 115Y, 118S, 146I, 147D, 148A, 149G, 151P, 152M, 153K, 155Y, 227D, 230V, 231R, 234I, 235K
CDD
cd11370 (RNase_PH_RRP41)149GRrp4 interface
36D, 54G, 55P, 56R, 57E, 59R, 111M, 115Y, 118S, 146I, 147D, 148A, 149G, 151P, 152M, 153K, 155Y, 227D, 230V, 231R, 234I, 235K
CDD
cd11370 (RNase_PH_RRP41)151PRrp4 interface
36D, 54G, 55P, 56R, 57E, 59R, 111M, 115Y, 118S, 146I, 147D, 148A, 149G, 151P, 152M, 153K, 155Y, 227D, 230V, 231R, 234I, 235K
CDD
cd11370 (RNase_PH_RRP41)152MRrp4 interface
36D, 54G, 55P, 56R, 57E, 59R, 111M, 115Y, 118S, 146I, 147D, 148A, 149G, 151P, 152M, 153K, 155Y, 227D, 230V, 231R, 234I, 235K
CDD
cd11370 (RNase_PH_RRP41)153KRrp4 interface
36D, 54G, 55P, 56R, 57E, 59R, 111M, 115Y, 118S, 146I, 147D, 148A, 149G, 151P, 152M, 153K, 155Y, 227D, 230V, 231R, 234I, 235K
CDD
cd11370 (RNase_PH_RRP41)155YRrp4 interface
36D, 54G, 55P, 56R, 57E, 59R, 111M, 115Y, 118S, 146I, 147D, 148A, 149G, 151P, 152M, 153K, 155Y, 227D, 230V, 231R, 234I, 235K
CDD
cd11370 (RNase_PH_RRP41)227DRrp4 interface
36D, 54G, 55P, 56R, 57E, 59R, 111M, 115Y, 118S, 146I, 147D, 148A, 149G, 151P, 152M, 153K, 155Y, 227D, 230V, 231R, 234I, 235K
CDD
cd11370 (RNase_PH_RRP41)230VRrp4 interface
36D, 54G, 55P, 56R, 57E, 59R, 111M, 115Y, 118S, 146I, 147D, 148A, 149G, 151P, 152M, 153K, 155Y, 227D, 230V, 231R, 234I, 235K
CDD
cd11370 (RNase_PH_RRP41)231RRrp4 interface
36D, 54G, 55P, 56R, 57E, 59R, 111M, 115Y, 118S, 146I, 147D, 148A, 149G, 151P, 152M, 153K, 155Y, 227D, 230V, 231R, 234I, 235K
CDD
cd11370 (RNase_PH_RRP41)234IRrp4 interface
36D, 54G, 55P, 56R, 57E, 59R, 111M, 115Y, 118S, 146I, 147D, 148A, 149G, 151P, 152M, 153K, 155Y, 227D, 230V, 231R, 234I, 235K
CDD
cd11370 (RNase_PH_RRP41)235KRrp4 interface
36D, 54G, 55P, 56R, 57E, 59R, 111M, 115Y, 118S, 146I, 147D, 148A, 149G, 151P, 152M, 153K, 155Y, 227D, 230V, 231R, 234I, 235K
CDD
cd11370 (RNase_PH_RRP41)
GO term prediction
Biological Process
None predicted.
Molecular Function
None predicted.
Cellular Component
None predicted.